Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   RIM63_RS10420 Genome accession   NZ_CP133952
Coordinates   2143582..2144355 (+) Length   257 a.a.
NCBI ID   WP_317584221.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2138582..2149355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS10410 (RIM63_10410) rlmH 2141551..2142030 (-) 480 WP_317584217.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RIM63_RS10415 (RIM63_10415) htrA 2142240..2143463 (+) 1224 WP_317584219.1 trypsin-like peptidase domain-containing protein Regulator
  RIM63_RS10420 (RIM63_10420) spo0J 2143582..2144355 (+) 774 WP_317584221.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29116.81 Da        Isoelectric Point: 9.8971

>NTDB_id=877795 RIM63_RS10420 WP_317584221.1 2143582..2144355(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain HT321]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIIK
EMSTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIAAYMGKSRPYISNTIRLLQLPDVIKQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKAKHHPQKRSKHKTIFVKSLEKELSKSLGLPVALSLKKNDSGQLQ
LSFSNQEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=877795 RIM63_RS10420 WP_317584221.1 2143582..2144355(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCCTATCAACCGCGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGCTTGATTCAACCAATCATTGTCAGAAAGTCTGATGTTTTTG
GTTATGAATTAGTCGCTGGAGAGCGGCGCTTCAAAGCAGCCAAGCTGGCAGGGCTTCAAAAGATTCCAGCAATTATCAAG
GAGATGTCTACTCTTGAGAGCATGCAGCAGGCCATTGTAGAAAACCTACAGCGCTCGAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTCATTGATAAAAATAAGATGACCCATGAGGACATCGCAGCATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGGCTGCTGCAACTACCAGACGTTATTAAACAAGCGATTGAGGACGGTACCATTAGTGCTGGA
CATGCAAGAGCCTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAAGCTAAGCATCACCCCCAAAAAAGAAGCAAACATAAAACCATTTTTGTGAAAT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCAAAAAAAATGACAGTGGGCAGCTACAG
CTATCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGCTAAAGTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619