Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   RIM63_RS09130 Genome accession   NZ_CP133952
Coordinates   1870658..1871143 (-) Length   161 a.a.
NCBI ID   WP_012677392.1    Uniprot ID   A0A380JSU6
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865658..1876143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS09105 (RIM63_09105) - 1866090..1866650 (-) 561 WP_012680112.1 TIGR01440 family protein -
  RIM63_RS09110 (RIM63_09110) - 1866663..1867136 (-) 474 WP_012680113.1 ECF transporter S component -
  RIM63_RS09115 (RIM63_09115) - 1867142..1867891 (-) 750 WP_317583949.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RIM63_RS09120 (RIM63_09120) truA 1867881..1868630 (-) 750 WP_111678579.1 tRNA pseudouridine(38-40) synthase TruA -
  RIM63_RS09125 (RIM63_09125) - 1868817..1870181 (+) 1365 WP_317583951.1 aspartate kinase -
  RIM63_RS09130 (RIM63_09130) comX/sigX/comX2/sigX2 1870658..1871143 (-) 486 WP_012677392.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19371.39 Da        Isoelectric Point: 7.3119

>NTDB_id=877789 RIM63_RS09130 WP_012677392.1 1870658..1871143(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain HT321]
MSDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRLILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGAVGHAIPAGGLGVDDYVAYQLIVKEVEEQLTESELLQFRALIRGERFEGRRALLRKIGPYFQDFTGE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=877789 RIM63_RS09130 WP_012677392.1 1870658..1871143(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAGTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTGGATGATTGGTTACAGGAAGGGCGGTTGATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGCTGTATCGTTACTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGGCGGTAGGGCATGCGATACCAGCAGGTGGCTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCAATTGACAGAGAGCGAGCTGTTACAGTTTAGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGTGAG
AAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JSU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

68.75

99.379

0.683
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

68.75

99.379

0.683
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

68.75

99.379

0.683
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

68.75

99.379

0.683
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

48.387

96.273

0.466
  comX/sigX Streptococcus mutans UA159

46.497

97.516

0.453
  comX Streptococcus sobrinus strain NIDR 6715-7

45.752

95.031

0.435
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.667

93.168

0.379
  comX Streptococcus thermophilus LMD-9

39.216

95.031

0.373
  comX Streptococcus thermophilus LMG 18311

39.216

95.031

0.373
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

39.735

93.789

0.373
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

39.333

93.168

0.366
  comX/comX2 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae Rx1

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae D39

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae R6

38.411

93.789

0.36
  comX/comX1 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/comX2 Streptococcus pneumoniae TIGR4

38.411

93.789

0.36
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

38.667

93.168

0.36