Detailed information NTG0877766

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RIM63_RS05550
• Genome accession: NZ_CP133952
• Coordinates: 1148353..1150446 (+)
• Length: 697 a.a.
• NCBI ID: WP_317583282.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain HT321
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1143353..1155446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM63_RS05530 (RIM63_05530)	-	1143559..1144842 (-)	1284	WP_317583280.1	homoserine dehydrogenase	-
RIM63_RS05535 (RIM63_05535)	-	1145013..1145978 (+)	966	WP_043030836.1	polysaccharide deacetylase family protein	-
RIM63_RS05540 (RIM63_05540)	-	1146263..1147069 (-)	807	WP_317583281.1	DNA/RNA non-specific endonuclease	-
RIM63_RS05545 (RIM63_05545)	ndk	1147563..1147982 (-)	420	WP_037581033.1	nucleoside-diphosphate kinase	-
RIM63_RS05550 (RIM63_05550)	clpC	1148353..1150446 (+)	2094	WP_317583282.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RIM63_RS05555 (RIM63_05555)	-	1150636..1153638 (-)	3003	WP_317583283.1	leucine-rich repeat domain-containing protein	-
RIM63_RS05560 (RIM63_05560)	-	1153724..1154005 (-)	282	WP_317583284.1	hypothetical protein	-
RIM63_RS05565 (RIM63_05565)	yihA	1154010..1154609 (-)	600	WP_317585263.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76707.73 Da
• Isoelectric Point: 5.1764

>NTDB_id=877766 RIM63_RS05550 WP_317583282.1 1148353..1150446(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain HT321]
MTTYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAAAEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQERAVAAEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGAND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQIITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=877766 RIM63_RS05550 WP_317583282.1 1148353..1150446(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGACAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTTAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAGCTGAAGGACAAGACAAACAGGCTGGCAGCCTTAAAAAAGATGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCGACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAATCCTGTGCTTGTCGGTGACGCTGGCGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATTGTCAATGGTGATGTGCCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGTACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAGGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATTCTTGGTGCAGGGTCAGCTGGTTCAGATTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATTTTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTGCCAGATTCTGTTTTGAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAGGGCTGTTGCAGCAGAAGA
CTTTGAAAAGGCCTTAACTGCTAAGACACGCATTGAGGAGCTTCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGACATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGGCTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCAATTCGACGCAACAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGTTCCTTCCTCTTTGTTGGTCCGACTGGTG
TTGGCAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGCCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGATCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGACAAGGCAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACTTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGCATTAGCCTTGAGGTGACTGATGATGTT
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCGATGGGAGTTCGTCCACTTAGACGTGTCATTGAACAAGAAATTCG
TGACCGTATTACTGACTACTACCTGGATCACCCGACTGCTAAGCACCTATTAGCAAGTCTTGATCAAGATACTATTACGA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-352)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.063	100	0.481
clpE	Streptococcus mutans UA159	48.023	97.991	0.471
clpE	Streptococcus pneumoniae Rx1	50.635	90.387	0.458
clpE	Streptococcus pneumoniae D39	50.635	90.387	0.458
clpE	Streptococcus pneumoniae R6	50.635	90.387	0.458
clpE	Streptococcus pneumoniae TIGR4	50.635	90.387	0.458
clpC	Bacillus subtilis subsp. subtilis str. 168	45.673	89.527	0.409
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.88	88.666	0.38
clpC	Streptococcus thermophilus LMG 18311	42.718	88.666	0.379
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.165	88.809	0.374