Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RIM63_RS03135 Genome accession   NZ_CP133952
Coordinates   649800..651602 (+) Length   600 a.a.
NCBI ID   WP_317584811.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 644800..656602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS03115 (RIM63_03115) queA 645853..646881 (-) 1029 WP_012678257.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RIM63_RS03120 (RIM63_03120) nagB 647150..647854 (+) 705 WP_317584806.1 glucosamine-6-phosphate deaminase -
  RIM63_RS03125 (RIM63_03125) - 648026..648742 (+) 717 WP_317584808.1 pseudouridine synthase -
  RIM63_RS03130 (RIM63_03130) - 648833..649810 (+) 978 WP_317584809.1 competence protein CoiA family protein -
  RIM63_RS03135 (RIM63_03135) pepF 649800..651602 (+) 1803 WP_317584811.1 oligoendopeptidase F Regulator
  RIM63_RS03140 (RIM63_03140) - 651801..652358 (+) 558 WP_317584813.1 GNAT family N-acetyltransferase -
  RIM63_RS03145 (RIM63_03145) - 652348..652983 (+) 636 WP_317584814.1 HAD-IA family hydrolase -
  RIM63_RS03150 (RIM63_03150) - 653030..653668 (+) 639 WP_021320537.1 HAD family phosphatase -
  RIM63_RS03155 (RIM63_03155) - 653751..654458 (+) 708 WP_317584816.1 O-methyltransferase -
  RIM63_RS03160 (RIM63_03160) prsA 654521..655522 (+) 1002 WP_317584818.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69070.73 Da        Isoelectric Point: 4.5587

>NTDB_id=877756 RIM63_RS03135 WP_317584811.1 649800..651602(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain HT321]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYTSARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGSQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=877756 RIM63_RS03135 WP_317584811.1 649800..651602(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTATACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAATATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGCTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGAGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCTTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATACTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCCTAGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTTCATCGTGCCTTTACGGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAGCGCTCAGGAGCTTATTCTGGTGGTTCTTATGATACCAATGCCTTTATGCTTTTAAATT
GGCAAGACACCCTTGATAACCTCTACACTCTAGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATCTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACCGAAGC
TTTGTTACATGAGGTACAAGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGCGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCAGATCAAAATGGCGAGGTATTAACAAGTGAATAC
CTCAATAATCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATCCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATTGTGCATGGTAGTCAAGAGGATATTGATCACTACTTGACTTATCTGAAGTCTGGAAATTCAGACTATCCTCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGAGATTACCTAGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.667

100

0.727