Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RIM63_RS01250 Genome accession   NZ_CP133952
Coordinates   240420..241781 (+) Length   453 a.a.
NCBI ID   WP_317585233.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 235420..246781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS01235 (RIM63_01235) - 236995..238791 (+) 1797 WP_206158941.1 ABC transporter ATP-binding protein -
  RIM63_RS01240 (RIM63_01240) - 238942..239709 (+) 768 WP_115250535.1 epoxyqueuosine reductase QueH -
  RIM63_RS01245 (RIM63_01245) - 239908..240354 (+) 447 WP_037580461.1 dUTP diphosphatase -
  RIM63_RS01250 (RIM63_01250) radA 240420..241781 (+) 1362 WP_317585233.1 DNA repair protein RadA Machinery gene
  RIM63_RS01255 (RIM63_01255) - 241952..242290 (-) 339 WP_164335326.1 hypothetical protein -
  RIM63_RS01260 (RIM63_01260) - 242616..243122 (+) 507 WP_317584418.1 carbonic anhydrase -
  RIM63_RS01265 (RIM63_01265) - 243250..243963 (+) 714 WP_037580456.1 TIGR00266 family protein -
  RIM63_RS01270 (RIM63_01270) gltX 244725..246170 (+) 1446 WP_037580454.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49344.73 Da        Isoelectric Point: 6.7545

>NTDB_id=877747 RIM63_RS01250 WP_317585233.1 240420..241781(+) (radA) [Streptococcus equi subsp. zooepidemicus strain HT321]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEDEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAIFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=877747 RIM63_RS01250 WP_317585233.1 240420..241781(+) (radA) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGGTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGATGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCTGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGACTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCCGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTTCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTTACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAACGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGTTACAAGGAAAAACCGACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATCAATGAAGCTGCTAAGCTTGGTTTTACCAAGCTTTACGCGCCTAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAGGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTTTTAAAGGCAATCTTTGCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.327

100

0.843
  radA Streptococcus pneumoniae D39

84.327

100

0.843
  radA Streptococcus pneumoniae R6

84.327

100

0.843
  radA Streptococcus pneumoniae TIGR4

84.327

100

0.843
  radA Streptococcus mitis NCTC 12261

83.885

100

0.839
  radA Streptococcus mitis SK321

83.885

100

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614