Detailed information NTG0877746

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RIM63_RS00830
• Genome accession: NZ_CP133952
• Coordinates: 148209..150650 (+)
• Length: 813 a.a.
• NCBI ID: WP_317584325.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain HT321
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 143209..155650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM63_RS00800 (RIM63_00800)	ahpF	143548..145080 (-)	1533	WP_111689774.1	alkyl hydroperoxide reductase subunit F	-
RIM63_RS00805 (RIM63_00805)	ahpC	145101..145661 (-)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
RIM63_RS00815 (RIM63_00815)	-	146403..146993 (+)	591	WP_317584322.1	exotoxin beta-grasp domain-containing protein	-
RIM63_RS00820 (RIM63_00820)	-	147373..147576 (+)	204	WP_012514799.1	cold-shock protein	-
RIM63_RS00825 (RIM63_00825)	-	147748..148209 (+)	462	WP_012514800.1	CtsR family transcriptional regulator	-
RIM63_RS00830 (RIM63_00830)	clpC	148209..150650 (+)	2442	WP_317584325.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RIM63_RS00835 (RIM63_00835)	-	150998..151143 (-)	146	Protein_129	putative holin-like toxin	-
RIM63_RS00840 (RIM63_00840)	-	151424..151846 (+)	423	WP_317584328.1	hypothetical protein	-
RIM63_RS00845 (RIM63_00845)	-	151857..151988 (+)	132	WP_268810486.1	hypothetical protein	-
RIM63_RS00850 (RIM63_00850)	-	152076..152507 (+)	432	WP_014622158.1	hypothetical protein	-
RIM63_RS00855 (RIM63_00855)	-	152509..153798 (+)	1290	WP_317584331.1	hypothetical protein	-
RIM63_RS00860 (RIM63_00860)	-	153780..154172 (+)	393	WP_317584332.1	hypothetical protein	-
RIM63_RS00865 (RIM63_00865)	-	154153..154443 (+)	291	WP_164336150.1	hypothetical protein	-
RIM63_RS00870 (RIM63_00870)	groES	154742..155029 (+)	288	WP_012514806.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90471.30 Da
• Isoelectric Point: 6.5233

>NTDB_id=877746 RIM63_RS00830 WP_317584325.1 148209..150650(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain HT321]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKTKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYSLAQRIANGVIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPSLSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKRLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=877746 RIM63_RS00830 WP_317584325.1 148209..150650(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain HT321]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCTGTTGATCATTCTTTAGCAGCCATGGTTTTAAGTGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTCACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGACATTATGGCTAGTCGTCTATTAGAATTGGCAGGCTACAGGC
TTAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGTAAGGAA
ACCATTAAGGCGATTCATGAGTTGCGTAAACCTAAAAAGACGAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACTAGAGACCTGACAGAGATGGCAAGACAGGGCTTGTTAGAGCCAGTTATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTCTGTCGTAAGACTAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTTGGAAAAACTGCTCTAGCTTATAGCTTGGCACAGCGTATTGCAAACGGCGTGATTCCTTATGAATTACAGGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGCAAAATCATCTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCATCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCTCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACAATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGTTACTTGACGAGTAAGCGGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACACCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGGGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGTTAGCTTTTGATATTGCTTGA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (374-457)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.293	100	0.743
clpC	Streptococcus thermophilus LMD-9	71.936	100	0.722
clpC	Streptococcus thermophilus LMG 18311	71.691	100	0.72
clpC	Streptococcus pneumoniae Rx1	65.602	100	0.657
clpC	Streptococcus pneumoniae D39	65.602	100	0.657
clpC	Streptococcus pneumoniae TIGR4	65.479	100	0.656
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.626	100	0.501
clpC	Bacillus subtilis subsp. subtilis str. 168	43.952	100	0.451