Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   RIM64_RS10460 Genome accession   NZ_CP133951
Coordinates   51774..51872 (+) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 46774..56872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS00275 (RIM64_00275) purE 46942..47430 (+) 489 WP_159334807.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RIM64_RS00280 (RIM64_00280) purK 47417..48508 (+) 1092 WP_159334808.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RIM64_RS00285 (RIM64_00285) - 48518..48742 (+) 225 WP_012514713.1 hypothetical protein -
  RIM64_RS00290 (RIM64_00290) - 48766..48870 (+) 105 WP_370444775.1 hypothetical protein -
  RIM64_RS00295 (RIM64_00295) purB 49187..50479 (+) 1293 WP_037582405.1 adenylosuccinate lyase -
  RIM64_RS00300 (RIM64_00300) comR 50777..51691 (+) 915 WP_043030321.1 XRE family transcriptional regulator Regulator
  RIM64_RS10460 comS 51774..51872 (+) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  RIM64_RS00305 (RIM64_00305) ruvB 51906..52907 (+) 1002 WP_115266532.1 Holliday junction branch migration DNA helicase RuvB -
  RIM64_RS00310 (RIM64_00310) - 53155..53613 (+) 459 WP_012678781.1 low molecular weight protein-tyrosine-phosphatase -
  RIM64_RS00315 (RIM64_00315) - 53619..54020 (+) 402 WP_115266533.1 MORN repeat-containing protein -
  RIM64_RS00320 (RIM64_00320) - 54017..55798 (+) 1782 WP_111689737.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=877736 RIM64_RS10460 WP_021320241.1 51774..51872(+) (comS) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=877736 RIM64_RS10460 WP_021320241.1 51774..51872(+) (comS) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGTTTAAAAAATATCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375