Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RIM64_RS08450 Genome accession   NZ_CP133951
Coordinates   1760111..1760836 (-) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755111..1765836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS08430 (RIM64_08430) - 1756294..1757550 (+) 1257 WP_231148149.1 ISL3 family transposase -
  RIM64_RS08435 (RIM64_08435) trmB 1757584..1758219 (-) 636 WP_115250646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RIM64_RS08440 (RIM64_08440) ccrZ 1758219..1759010 (-) 792 WP_012515084.1 cell cycle regulator CcrZ -
  RIM64_RS08445 (RIM64_08445) - 1759073..1760107 (-) 1035 WP_012679097.1 ABC transporter permease -
  RIM64_RS08450 (RIM64_08450) pptA 1760111..1760836 (-) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  RIM64_RS08455 (RIM64_08455) - 1761373..1761861 (+) 489 WP_115267096.1 hypothetical protein -
  RIM64_RS08460 (RIM64_08460) - 1762313..1762732 (+) 420 WP_115267097.1 HIT family protein -
  RIM64_RS08465 (RIM64_08465) - 1762729..1763031 (+) 303 WP_115267098.1 chemotaxis protein -
  RIM64_RS08470 (RIM64_08470) brpA 1763195..1764457 (-) 1263 WP_115267099.1 biofilm formation/cell division transcriptional regulator BrpA -
  RIM64_RS08475 (RIM64_08475) - 1764458..1764985 (-) 528 WP_115267100.1 GNAT family N-acetyltransferase -
  RIM64_RS08480 (RIM64_08480) tsaE 1764978..1765421 (-) 444 WP_043040146.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=877725 RIM64_RS08450 WP_012678429.1 1760111..1760836(-) (pptA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=877725 RIM64_RS08450 WP_012678429.1 1760111..1760836(-) (pptA) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73