Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   RIM64_RS01890 Genome accession   NZ_CP133951
Coordinates   375851..376537 (+) Length   228 a.a.
NCBI ID   WP_012516253.1    Uniprot ID   U5Y8A0
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 370851..381537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS01870 (RIM64_01870) rsmG 372513..373226 (-) 714 WP_012516257.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RIM64_RS01875 (RIM64_01875) - 373362..373919 (+) 558 WP_012677410.1 LemA family protein -
  RIM64_RS01880 (RIM64_01880) htpX 373951..374844 (+) 894 WP_012516255.1 zinc metalloprotease HtpX -
  RIM64_RS01885 (RIM64_01885) - 375132..375665 (+) 534 WP_043053397.1 DUF177 domain-containing protein -
  RIM64_RS01890 (RIM64_01890) covR 375851..376537 (+) 687 WP_012516253.1 two-component system response regulator CovR Regulator
  RIM64_RS01895 (RIM64_01895) - 376541..378031 (+) 1491 WP_012516252.1 HAMP domain-containing histidine kinase -
  RIM64_RS01900 (RIM64_01900) nrdR 378222..378716 (+) 495 WP_012516251.1 transcriptional regulator NrdR -
  RIM64_RS01905 (RIM64_01905) - 378700..379863 (+) 1164 WP_317583208.1 helicase loader -
  RIM64_RS01910 (RIM64_01910) dnaI 379864..380772 (+) 909 WP_012516249.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26580.56 Da        Isoelectric Point: 4.6541

>NTDB_id=877694 RIM64_RS01890 WP_012516253.1 375851..376537(+) (covR) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=877694 RIM64_RS01890 WP_012516253.1 375851..376537(+) (covR) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAGAATCTTGCAAGATTTGTTTCGCTTGAGCTACAACATGAGGGTTA
CGAGGTGACCGTCGAGGTTAATGGTCGTGAGGGCTTGGAGACAGCCCTAGAGAAGGACTTTGACTTAATCCTTCTTGATT
TGATGCTTCCTGAGATGGACGGATTTGAAGTGACACGTCGCTTGCAAACAGAAAAAACGACTTACATCATGATGATGACT
GCGCGTGACTCTATTATGGACGTTGTAGCCGGCTTGGATCGTGGTGCTGATGATTATATCGTGAAGCCATTTGCCATTGA
GGAATTGCTGGCGCGTATTCGTGCTATCTTCCGTCGTCAGGACATTGAGTCAGAGAAAAAGACTCCTAGTCAAGGCGTTT
ACCGCGACTTAGTCTTAAACCCTCAAAACCGCTCTGTCAATCGCGGTGATGACGAGATTTCACTGACTAAGCGTGAATAT
GACCTGCTTAATATTTTGATGACAAACATGAATCGTGTCATGACTCGTGAGGAGCTCTTGTCTAACGTTTGGAAATATGA
CGAGGCTGTTGAAACTAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGGAAGATCGATATCCCTGGGAAAGAGTCTT
ACATTCAAACTGTTCGTGGAATGGGTTATGTGATTCGCGAGAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5Y8A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.533

100

0.829
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.401

99.561

0.671
  vicR Streptococcus mutans UA159

43.29

100

0.439
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425