Detailed information NTG0877684

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RIM64_RS00805
• Genome accession: NZ_CP133951
• Coordinates: 139460..141901 (+)
• Length: 813 a.a.
• NCBI ID: WP_115266558.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain JMC111
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 134460..146901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM64_RS00775 (RIM64_00775)	rpsB	134848..135618 (-)	771	WP_012677249.1	30S ribosomal protein S2	-
RIM64_RS00780 (RIM64_00780)	ahpF	135879..137411 (-)	1533	WP_042669839.1	alkyl hydroperoxide reductase subunit F	-
RIM64_RS00785 (RIM64_00785)	ahpC	137432..137992 (-)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
RIM64_RS00795 (RIM64_00795)	-	138624..138827 (+)	204	WP_012514799.1	cold-shock protein	-
RIM64_RS00800 (RIM64_00800)	-	138999..139460 (+)	462	WP_012677252.1	CtsR family transcriptional regulator	-
RIM64_RS00805 (RIM64_00805)	clpC	139460..141901 (+)	2442	WP_115266558.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RIM64_RS00810 (RIM64_00810)	-	142247..142393 (-)	147	WP_080312399.1	putative holin-like toxin	-
RIM64_RS00815 (RIM64_00815)	-	142673..143104 (+)	432	WP_115266559.1	hypothetical protein	-
RIM64_RS00820 (RIM64_00820)	-	143325..143756 (+)	432	WP_014622158.1	hypothetical protein	-
RIM64_RS00825 (RIM64_00825)	-	143758..145047 (+)	1290	WP_165619590.1	hypothetical protein	-
RIM64_RS00830 (RIM64_00830)	-	145029..145421 (+)	393	WP_165619589.1	hypothetical protein	-
RIM64_RS00835 (RIM64_00835)	-	145402..145692 (+)	291	WP_012514805.1	hypothetical protein	-
RIM64_RS00840 (RIM64_00840)	groES	145991..146278 (+)	288	WP_012514806.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90438.23 Da
• Isoelectric Point: 6.3499

>NTDB_id=877684 RIM64_RS00805 WP_115266558.1 139460..141901(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AIHTAVKLAQRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSRLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAISHDHQAMEKRILEELKRAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGDLSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=877684 RIM64_RS00805 WP_115266558.1 139460..141901(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain JMC111]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTGGCTATGGTGGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAACGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAGTTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTATCCATACTGCTGTGAAGCTGGCTCAGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACACCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGTTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAGGCTATCAGGTATTCCACTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
AAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAAGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
TTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGACATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCTCGTCTCAATGGTGCTCCTCCTGGCTATGTTGGCTATGATGAAGGAGGCGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTCGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTGCGTGATGATAAGACTGTGGGATTTGGTGCTAAAGCGATCAGTCATGACCATCAGGCTATGGAAA
AACGTATTTTAGAGGAGCTGAAAAGGGCTTACAGACCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAACCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGGGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGATTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGCTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• AAA lid domain (AAA_lid_9) (374-457)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.662	100	0.747
clpC	Streptococcus thermophilus LMD-9	72.304	100	0.726
clpC	Streptococcus thermophilus LMG 18311	72.059	100	0.723
clpC	Streptococcus pneumoniae Rx1	65.848	100	0.659
clpC	Streptococcus pneumoniae D39	65.848	100	0.659
clpC	Streptococcus pneumoniae TIGR4	65.725	100	0.658
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.862	100	0.502
clpC	Bacillus subtilis subsp. subtilis str. 168	44.072	100	0.453