Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OCX11_RS04540 Genome accession   NZ_AP024726
Coordinates   944440..945426 (+) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain 59482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 939440..950426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS04515 opp4B 939653..940615 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OCX11_RS04520 opp4C 940627..941508 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  OCX11_RS04525 trpS 941550..942539 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  OCX11_RS04530 spxA 942834..943229 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OCX11_RS04535 mecA 943600..944319 (+) 720 WP_001217728.1 adaptor protein MecA -
  OCX11_RS04540 coiA 944440..945426 (+) 987 WP_000959293.1 competence protein CoiA Machinery gene
  OCX11_RS04545 pepF 945474..947282 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  OCX11_RS04550 yjbH 947742..948548 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OCX11_RS04555 - 948571..948936 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OCX11_RS04560 - 949040..949633 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  OCX11_RS04565 - 949819..950166 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=87768 OCX11_RS04540 WP_000959293.1 944440..945426(+) (coiA) [Staphylococcus aureus strain 59482]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=87768 OCX11_RS04540 WP_000959293.1 944440..945426(+) (coiA) [Staphylococcus aureus strain 59482]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment