Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RIM62_RS07080 Genome accession   NZ_CP133950
Coordinates   1479601..1481403 (-) Length   600 a.a.
NCBI ID   WP_165619322.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474601..1486403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS07055 (RIM62_07055) prsA 1475680..1476681 (-) 1002 WP_115267017.1 peptidylprolyl isomerase PrsA -
  RIM62_RS07060 (RIM62_07060) - 1476744..1477451 (-) 708 WP_038674443.1 O-methyltransferase -
  RIM62_RS07065 (RIM62_07065) - 1477533..1478171 (-) 639 WP_038674841.1 HAD family phosphatase -
  RIM62_RS07070 (RIM62_07070) - 1478222..1478854 (-) 633 WP_043038800.1 HAD-IA family hydrolase -
  RIM62_RS07075 (RIM62_07075) - 1478844..1479401 (-) 558 WP_043038799.1 GNAT family N-acetyltransferase -
  RIM62_RS07080 (RIM62_07080) pepF 1479601..1481403 (-) 1803 WP_165619322.1 oligoendopeptidase F Regulator
  RIM62_RS07085 (RIM62_07085) - 1481393..1482370 (-) 978 WP_231148168.1 competence protein CoiA -
  RIM62_RS07090 (RIM62_07090) - 1482462..1483178 (-) 717 WP_165619326.1 pseudouridine synthase -
  RIM62_RS07095 (RIM62_07095) nagB 1483350..1484054 (-) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  RIM62_RS07100 (RIM62_07100) queA 1484322..1485350 (+) 1029 WP_165619328.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69032.72 Da        Isoelectric Point: 4.5408

>NTDB_id=877656 RIM62_RS07080 WP_165619322.1 1479601..1481403(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNKLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=877656 RIM62_RS07080 WP_165619322.1 1479601..1481403(-) (pepF) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGTTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCTATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTACCTGAAGCTGCGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCCTAGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTTCATCGTGCCTTTACGGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGGGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACTCTAGTGCATGAGACAGGTCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATCTTCTTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAGACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGTGAGGTGTTAACAAGTGAATAC
CTCAATAAGCTATATGCTGATTTAAATGAAAAGTATTATGGATTAAAGAAAGAGGACAACCACTTTATCCAGTATGAGTG
GGCTCGTATCCCACACTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATTGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACCTATCTGAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73