Detailed information NTG0877576

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: RHN62_RS06495
• Genome accession: NZ_CP133937
• Coordinates: 1362336..1363724 (-)
• Length: 462 a.a.
• NCBI ID: WP_241951070.1
• Uniprot ID: -
• Organism: Pasteurella multocida strain AKS2021-HT3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1357336..1368724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHN62_RS06465	-	1357462..1358835 (-)	1374	WP_241951065.1	sodium:alanine symporter family protein	-
RHN62_RS06470	-	1359285..1359554 (-)	270	WP_241951066.1	GNAT family N-acetyltransferase	-
RHN62_RS06475	yacG	1359554..1359757 (-)	204	WP_241951067.1	DNA gyrase inhibitor YacG	-
RHN62_RS06480	coaE	1359768..1360388 (-)	621	WP_241951068.1	dephospho-CoA kinase	-
RHN62_RS06485	-	1360403..1361125 (-)	723	WP_241951069.1	A24 family peptidase	-
RHN62_RS06490	-	1361125..1362336 (-)	1212	WP_241952331.1	type II secretion system F family protein	-
RHN62_RS06495	pilB	1362336..1363724 (-)	1389	WP_241951070.1	GspE/PulE family protein	Machinery gene
RHN62_RS06500	pilA	1363724..1364158 (-)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
RHN62_RS06505	ampD	1364318..1364884 (+)	567	WP_241951071.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
RHN62_RS06510	rppH	1365470..1366066 (+)	597	WP_005722417.1	RNA pyrophosphohydrolase	-
RHN62_RS06515	-	1366069..1366863 (+)	795	WP_005722415.1	sulfite exporter TauE/SafE family protein	-
RHN62_RS06520	lgt	1366873..1367676 (+)	804	WP_241951072.1	prolipoprotein diacylglyceryl transferase	-
RHN62_RS06525	-	1367682..1368533 (+)	852	WP_115097855.1	thymidylate synthase	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 52165.79 Da
• Isoelectric Point: 6.3686

>NTDB_id=877576 RHN62_RS06495 WP_241951070.1 1362336..1363724(-) (pilB) [Pasteurella multocida strain AKS2021-HT3]
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFAELGM
TVDQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSVEKHILTAEDPIEIALSGIIQTQVNTQIGLDFKRLLRT
FLRQDPDVIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRRCCDCS
VETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE

Nucleotide

• Length: 1389 bp

>NTDB_id=877576 RHN62_RS06495 WP_241951070.1 1362336..1363724(-) (pilB) [Pasteurella multocida strain AKS2021-HT3]
ATGTTTCATGAGAATCCTTTGTGTACTGTTAGCGCAATGACAGGAGAGGTATTTGAAATCCAACAGGCGCTATGGCAAAA
AAATCAGCAACAACAACGCTTTTTATTACGTTATTTTGCCTTGCCTTTACAAGAAGATGAAAAACAGCTGTGGCTTGGTG
TGGATTCGTTAGCGAATTTATCAGCATGTGATGCCTTTTCTTTTTTAACGAATAAACACATTGAGCCTGTTTTATTATCA
ACAAATGAACTTAAACGGGCATTGCAGCAACTTTCCCCACCAAAATTACAAGTGGAAGAAAACATACCCACGGTTTATCA
AGTCGCGCAATTAGATTCTGATTCCGCGACGGATGAACCTTTGATTCAATTACTTGATCAGGTTTTTGAACGTGCATTAC
AGCTACAGGCTTCTGACATTCATTTTGAACCGCAACAGCATAGCTTACAAGTGCGTTTTAGAATCGATGGTGTATTACAA
GTCCAGCCTTCCTTTTCAGGAATATTGGCTAATCGCCTGATTTCTCGTCTTAAATTATTAGCAAAATTAGATATTAGTGA
AACACGCTTGCCTCAGGACGGTTGTTTCCAATTTAAAACGACATTTTCTGATACATTAGATTTTCGACTTTCTACGTTGC
CCACCCATTTAGGCGAAAAAGCGGTATTACGTTTACAGCGAAATAAGCCTATTCATCTCAGTTTTGCCGAGTTGGGGATG
ACCGTAGACCAACAACACAGGTTCCAACACGCGTTAAGTCAGCCTCAAGGGCTAATTTTAGTCACGGGACCAACAGGGAG
TGGAAAAAGCATTTCGCTTTACAGTGCGTTAGCTTGGCTCAATAGCGTAGAAAAGCATATTTTAACAGCAGAAGATCCGA
TTGAAATTGCGTTGAGCGGGATAATCCAAACGCAAGTCAATACGCAAATAGGACTGGATTTCAAGCGCTTATTACGCACT
TTTTTACGTCAAGATCCAGACGTTATTATGTTAGGGGAAATTCGTGATGAGGAAAGTGCGTTAATCGCATTACGTGCGGC
TCAAACTGGGCATTTAGTCCTTTCTACCTTGCATACGAATGATGCCCCCTCTGCCCTTACTCGCTTACAGCAATTAGGGG
TGCCTTTGCATGAAATTGAACAAAGCCTATTACTTGTTGTGGCGCAGCGTTTATTGCGTCGTCGTTGTTGTGATTGCAGT
GTAGAGACACAATCGGCGTGTCGTTGCTATCAAGGGTATAAAGGGAGGATTGGGGTATATCAATTTTTACAAAAAGATAA
AACAGGGTGTTTTGTCACGGATTTTAGTAGTTTACGCGAGAGTGCGAAGGAAAAAGTTCGTTTAGGCATGACCGATGACA
ATGAAGTACAACGTGTATTAGGTGAATGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (128-394)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (19-93)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Haemophilus influenzae 86-028NP	67.991	98.052	0.667
pilB	Haemophilus influenzae Rd KW20	67.329	98.052	0.66
pilB	Glaesserella parasuis strain SC1401	58.37	98.268	0.574
pilB	Acinetobacter baumannii D1279779	39.351	100	0.42
pilB	Vibrio parahaemolyticus RIMD 2210633	40.125	100	0.418
pilB	Vibrio campbellii strain DS40M4	39.419	100	0.411
pilB	Vibrio cholerae strain A1552	38.683	100	0.407
pilB	Acinetobacter baylyi ADP1	37.675	100	0.407
pilB	Legionella pneumophila strain ERS1305867	36.81	100	0.39