NTDB

Overview

Name	luxP	Type	Regulator
Locus tag	RHS39_RS22130	Genome accession	NZ_CP133901
Coordinates	1304423..1305520 (-)	Length	365 a.a.
NCBI ID	WP_005463467.1	Uniprot ID	Q87GU4
Organism	Vibrio parahaemolyticus strain TW01
Function	autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1299423..1310520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS22115 (RHS39_22115)	-	1300087..1301142 (-)	1056	WP_015313427.1	HlyD family secretion protein	-
RHS39_RS22120 (RHS39_22120)	-	1301180..1301635 (-)	456	WP_005477342.1	MarR family transcriptional regulator	-
RHS39_RS22125 (RHS39_22125)	luxQ	1301847..1304423 (-)	2577	WP_005477121.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	-
RHS39_RS22130 (RHS39_22130)	luxP	1304423..1305520 (-)	1098	WP_005463467.1	autoinducer 2-binding periplasmic protein LuxP	Regulator
RHS39_RS22135 (RHS39_22135)	-	1305872..1306192 (-)	321	WP_025503451.1	GIY-YIG nuclease family protein	-
RHS39_RS22140 (RHS39_22140)	-	1306189..1306839 (-)	651	WP_017447360.1	YceH family protein	-
RHS39_RS22145 (RHS39_22145)	-	1307016..1307231 (-)	216	WP_005477197.1	hypothetical protein	-
RHS39_RS22150 (RHS39_22150)	-	1307559..1307873 (+)	315	WP_005453573.1	DUF496 family protein	-
RHS39_RS22155 (RHS39_22155)	-	1307996..1309333 (+)	1338	WP_025788324.1	MATE family efflux transporter	-
RHS39_RS22160 (RHS39_22160)	-	1309407..1310384 (-)	978	WP_005477354.1	Gfo/Idh/MocA family protein	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41339.67 Da Isoelectric Point: 5.0568

                                >NTDB_id=877456 RHS39_RS22130 WP_005463467.1 1304423..1305520(-) (luxP) [Vibrio parahaemolyticus strain TW01]

MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD

YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI

TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT

KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA

EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=877456 RHS39_RS22130 WP_005463467.1 1304423..1305520(-) (luxP) [Vibrio parahaemolyticus strain TW01]

ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG

CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG

ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT

TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC

GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATCTTTA

CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC

ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT

CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA

TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA

AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA

CGTTGCGTTAGGAGCCGTTGAAGCGCTGTCTGAACTTGGTCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG

CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA

GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA

TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
luxP	Vibrio cholerae strain A1552	64.56	99.726	0.644

Detailed information NTG0877456