Detailed information NTG0877436

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RHS39_RS13415
• Genome accession: NZ_CP133900
• Coordinates: 2896729..2897718 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain TW01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2891729..2902718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS13400 (RHS39_13400)	recA	2892280..2893320 (-)	1041	WP_025789425.1	recombinase RecA	Machinery gene
RHS39_RS13405 (RHS39_13405)	pncC	2893521..2894003 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
RHS39_RS13410 (RHS39_13410)	mutS	2894088..2896649 (+)	2562	WP_025789426.1	DNA mismatch repair protein MutS	-
RHS39_RS13415 (RHS39_13415)	rpoS	2896729..2897718 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
RHS39_RS13420 (RHS39_13420)	-	2897799..2898722 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
RHS39_RS13425 (RHS39_13425)	-	2898737..2899363 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RHS39_RS13430 (RHS39_13430)	surE	2899363..2900139 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
RHS39_RS13435 (RHS39_13435)	truD	2900139..2901182 (-)	1044	WP_025789427.1	tRNA pseudouridine(13) synthase TruD	-
RHS39_RS13440 (RHS39_13440)	ispF	2901229..2901705 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RHS39_RS13445 (RHS39_13445)	ispD	2901723..2902427 (-)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RHS39_RS13450 (RHS39_13450)	ftsB	2902429..2902710 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=877436 RHS39_RS13415 WP_005478537.1 2896729..2897718(-) (rpoS) [Vibrio parahaemolyticus strain TW01]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=877436 RHS39_RS13415 WP_005478537.1 2896729..2897718(-) (rpoS) [Vibrio parahaemolyticus strain TW01]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACTCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCTCGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851