Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RHS39_RS06770 Genome accession   NZ_CP133900
Coordinates   1460335..1461756 (-) Length   473 a.a.
NCBI ID   WP_025789226.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455335..1466756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS06745 (RHS39_06745) - 1455899..1456549 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  RHS39_RS06750 (RHS39_06750) purT 1456651..1457826 (-) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  RHS39_RS06755 (RHS39_06755) cdd 1457974..1458861 (-) 888 WP_025789225.1 cytidine deaminase -
  RHS39_RS06760 (RHS39_06760) - 1459226..1459903 (-) 678 WP_024701131.1 LrgB family protein -
  RHS39_RS06765 (RHS39_06765) - 1459905..1460279 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  RHS39_RS06770 (RHS39_06770) sbcB 1460335..1461756 (-) 1422 WP_025789226.1 exodeoxyribonuclease I Machinery gene
  RHS39_RS06775 (RHS39_06775) - 1461912..1463285 (-) 1374 WP_005486634.1 L-cystine transporter -
  RHS39_RS06780 (RHS39_06780) - 1463478..1464173 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  RHS39_RS06785 (RHS39_06785) cobT 1464857..1465900 (+) 1044 WP_025789227.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  RHS39_RS06790 (RHS39_06790) - 1465945..1466697 (+) 753 WP_031792000.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54625.99 Da        Isoelectric Point: 5.1867

>NTDB_id=877424 RHS39_RS06770 WP_025789226.1 1460335..1461756(-) (sbcB) [Vibrio parahaemolyticus strain TW01]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKSMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPKIREKLIGLFSVERHFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=877424 RHS39_RS06770 WP_025789226.1 1460335..1461756(-) (sbcB) [Vibrio parahaemolyticus strain TW01]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGTCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCTTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATCTGGCACTACTTCGCCAGCACCCTAAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTGTCGAGCGTCACTTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCGCT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795