Detailed information NTG0877414

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RHS39_RS01300
• Genome accession: NZ_CP133900
• Coordinates: 275529..276536 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain TW01
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 270529..281536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS01265 (RHS39_01265)	-	270706..271137 (-)	432	WP_005489473.1	DUF2787 family protein	-
RHS39_RS01270 (RHS39_01270)	radC	271134..271607 (-)	474	WP_005489555.1	DNA repair protein RadC	-
RHS39_RS01275 (RHS39_01275)	-	271778..271927 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
RHS39_RS01280 (RHS39_01280)	-	272087..272311 (+)	225	WP_005489715.1	hypothetical protein	-
RHS39_RS01285 (RHS39_01285)	hslU	272736..274067 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
RHS39_RS01290 (RHS39_01290)	hslV	274091..274642 (-)	552	WP_025789387.1	ATP-dependent protease subunit HslV	-
RHS39_RS01295 (RHS39_01295)	ftsN	274807..275352 (-)	546	WP_005481405.1	cell division protein FtsN	-
RHS39_RS01300 (RHS39_01300)	cytR	275529..276536 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
RHS39_RS01305 (RHS39_01305)	priA	276869..279073 (-)	2205	WP_025789388.1	primosomal protein N'	-
RHS39_RS01310 (RHS39_01310)	rpmE	279369..279590 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
RHS39_RS01315 (RHS39_01315)	rpsJ	280048..280359 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
RHS39_RS01320 (RHS39_01320)	rplC	280374..281003 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=877414 RHS39_RS01300 WP_005481416.1 275529..276536(-) (cytR) [Vibrio parahaemolyticus strain TW01]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=877414 RHS39_RS01300 WP_005481416.1 275529..276536(-) (cytR) [Vibrio parahaemolyticus strain TW01]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904