Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   RHS38_RS22350 Genome accession   NZ_CP133892
Coordinates   1340134..1341231 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain M0904     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335134..1346231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS22335 (RHS38_22335) - 1335798..1336853 (-) 1056 WP_020838057.1 HlyD family secretion protein -
  RHS38_RS22340 (RHS38_22340) - 1336891..1337346 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  RHS38_RS22345 (RHS38_22345) luxQ 1337558..1340134 (-) 2577 WP_085609692.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  RHS38_RS22350 (RHS38_22350) luxP 1340134..1341231 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  RHS38_RS22355 (RHS38_22355) - 1341583..1341903 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  RHS38_RS22360 (RHS38_22360) - 1341900..1342550 (-) 651 WP_085609693.1 YceH family protein -
  RHS38_RS22365 (RHS38_22365) - 1342727..1342942 (-) 216 WP_005477197.1 hypothetical protein -
  RHS38_RS22370 (RHS38_22370) - 1343270..1343584 (+) 315 WP_005453573.1 DUF496 family protein -
  RHS38_RS22375 (RHS38_22375) - 1343678..1344871 (+) 1194 WP_025548778.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=877410 RHS38_RS22350 WP_005463467.1 1340134..1341231(-) (luxP) [Vibrio parahaemolyticus strain M0904]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=877410 RHS38_RS22350 WP_005463467.1 1340134..1341231(-) (luxP) [Vibrio parahaemolyticus strain M0904]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATCAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644