Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   RHS38_RS19440 Genome accession   NZ_CP133892
Coordinates   724593..726641 (+) Length   682 a.a.
NCBI ID   WP_029803182.1    Uniprot ID   A0A7Z2MXY8
Organism   Vibrio parahaemolyticus strain M0904     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 719593..731641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS19420 (RHS38_19420) dcuC 719904..721271 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  RHS38_RS19425 (RHS38_19425) - 721625..722749 (-) 1125 WP_085609612.1 fatty acid desaturase -
  RHS38_RS19430 (RHS38_19430) - 723021..723569 (+) 549 WP_085609613.1 GNAT family N-acetyltransferase -
  RHS38_RS19435 (RHS38_19435) - 723656..724273 (-) 618 WP_005481262.1 HAD family phosphatase -
  RHS38_RS19440 (RHS38_19440) cqsS 724593..726641 (+) 2049 WP_029803182.1 response regulator Regulator
  RHS38_RS19445 (RHS38_19445) cqsA 726719..727900 (-) 1182 WP_031828215.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  RHS38_RS19450 (RHS38_19450) ylqF 728255..729199 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  RHS38_RS19455 (RHS38_19455) - 729489..730226 (-) 738 WP_191786179.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78269.07 Da        Isoelectric Point: 5.8750

>NTDB_id=877407 RHS38_RS19440 WP_029803182.1 724593..726641(+) (cqsS) [Vibrio parahaemolyticus strain M0904]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQIEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAIGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYASVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=877407 RHS38_RS19440 WP_029803182.1 724593..726641(+) (cqsS) [Vibrio parahaemolyticus strain M0904]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTACTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
GATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGATCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATAGGTGAAAAAGATCAGTATGTGATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAATCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATTGCGCCAGATGTGATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTTTGTAAGAAAGTCATGCGTTCGTTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCACCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCTGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTCGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCACAACGAGCTAAAAAAGCCGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGTTGCTAA
ACACTAAAGCTACGATTGAACGTTTGCTTTATGATTCCACTTATATCTCGTCAACCTTGCCGTCTGCTCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGATACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCATCGGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATAGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCAGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2MXY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.977

100

0.491