Detailed information NTG0877400

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RHS38_RS14795
• Genome accession: NZ_CP133891
• Coordinates: 3163503..3164510 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain M0904
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3158503..3169510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS38_RS14775 (RHS38_14775)	rplC	3159036..3159665 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
RHS38_RS14780 (RHS38_14780)	rpsJ	3159680..3159991 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
RHS38_RS14785 (RHS38_14785)	rpmE	3160449..3160670 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
RHS38_RS14790 (RHS38_14790)	priA	3160966..3163170 (+)	2205	WP_005496931.1	primosomal protein N'	-
RHS38_RS14795 (RHS38_14795)	cytR	3163503..3164510 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
RHS38_RS14800 (RHS38_14800)	ftsN	3164686..3165231 (+)	546	WP_005481405.1	cell division protein FtsN	-
RHS38_RS14805 (RHS38_14805)	hslV	3165395..3165946 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
RHS38_RS14810 (RHS38_14810)	hslU	3165970..3167301 (+)	1332	WP_025441237.1	HslU--HslV peptidase ATPase subunit	-
RHS38_RS14815 (RHS38_14815)	-	3167486..3168403 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RHS38_RS14820 (RHS38_14820)	rraA	3168480..3168992 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
RHS38_RS14825 (RHS38_14825)	zapB	3169097..3169339 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=877400 RHS38_RS14795 WP_005481416.1 3163503..3164510(+) (cytR) [Vibrio parahaemolyticus strain M0904]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=877400 RHS38_RS14795 WP_005481416.1 3163503..3164510(+) (cytR) [Vibrio parahaemolyticus strain M0904]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904