Detailed information NTG0877387

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: RHS38_RS03150
• Genome accession: NZ_CP133891
• Coordinates: 656644..660030 (-)
• Length: 1128 a.a.
• NCBI ID: WP_005461251.1
• Uniprot ID: Q87LY0
• Organism: Vibrio parahaemolyticus strain M0904
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 651644..665030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS38_RS03135 (RHS38_03135)	-	651868..652893 (-)	1026	WP_005461261.1	ABC transporter permease	-
RHS38_RS03140 (RHS38_03140)	-	652896..653882 (-)	987	WP_005461259.1	ABC transporter permease	-
RHS38_RS03145 (RHS38_03145)	-	654053..655735 (-)	1683	WP_005461274.1	ABC transporter substrate-binding protein	-
RHS38_RS03150 (RHS38_03150)	chiS	656644..660030 (-)	3387	WP_005461251.1	response regulator	Regulator
RHS38_RS03155 (RHS38_03155)	rsmC	660257..661282 (-)	1026	WP_025542645.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
RHS38_RS03160 (RHS38_03160)	-	661369..662454 (-)	1086	WP_057619571.1	AI-2E family transporter	-
RHS38_RS03165 (RHS38_03165)	hemL	662792..664087 (-)	1296	WP_025546697.1	glutamate-1-semialdehyde 2,1-aminomutase	-
RHS38_RS03170 (RHS38_03170)	erpA	664335..664676 (+)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127348.05 Da
• Isoelectric Point: 5.4383

>NTDB_id=877387 RHS38_RS03150 WP_005461251.1 656644..660030(-) (chiS) [Vibrio parahaemolyticus strain M0904]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=877387 RHS38_RS03150 WP_005461251.1 656644..660030(-) (chiS) [Vibrio parahaemolyticus strain M0904]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGACTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAAAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCGTATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTAACCTATTCCATTAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTATAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTAGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATTAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAAAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATACAAAAAT
CGGCAGTAAGCTTAGCTAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTTAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAACAAGTGCTGTATAATTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTCGACGATCACGTCCGCGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGTCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGTCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCTAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCACTGGTAGAACAAGAAAAGCCAGAGCTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACTTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAGCTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTAGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCGTCAGCTGACGAACTAATCGCACCAAAATACTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATTGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCC
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGCGGAGAGTTTACTCGTT
TGGCTGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTGGACTATTGGGAGTCTGTTACGGGTGAAAGTAAGTTTGCGTTTGCCGAACAAAGTGGGCTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCAATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAC
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: Q87LY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.77