Detailed information NTG0877379

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RHS38_RS02745
• Genome accession: NZ_CP133891
• Coordinates: 566600..567589 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain M0904
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 561600..572589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS38_RS02710 (RHS38_02710)	ftsB	561608..561889 (+)	282	WP_005455577.1	cell division protein FtsB	-
RHS38_RS02715 (RHS38_02715)	ispD	561891..562595 (+)	705	WP_025546668.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RHS38_RS02720 (RHS38_02720)	ispF	562613..563089 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RHS38_RS02725 (RHS38_02725)	truD	563136..564179 (+)	1044	WP_024702352.1	tRNA pseudouridine(13) synthase TruD	-
RHS38_RS02730 (RHS38_02730)	surE	564179..564955 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
RHS38_RS02735 (RHS38_02735)	-	564955..565581 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RHS38_RS02740 (RHS38_02740)	-	565596..566519 (+)	924	WP_025546666.1	peptidoglycan DD-metalloendopeptidase family protein	-
RHS38_RS02745 (RHS38_02745)	rpoS	566600..567589 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
RHS38_RS02750 (RHS38_02750)	mutS	567668..570229 (-)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
RHS38_RS02755 (RHS38_02755)	pncC	570314..570796 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
RHS38_RS02760 (RHS38_02760)	recA	570997..572040 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=877379 RHS38_RS02745 WP_005478537.1 566600..567589(+) (rpoS) [Vibrio parahaemolyticus strain M0904]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=877379 RHS38_RS02745 WP_005478537.1 566600..567589(+) (rpoS) [Vibrio parahaemolyticus strain M0904]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCGCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851