Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RHN82_RS01875 Genome accession   NZ_CP133860
Coordinates   351319..351945 (-) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter cloacae complex sp. EB5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 346319..356945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN82_RS01860 (RHN82_01860) helD 346558..348612 (-) 2055 WP_047051697.1 DNA helicase IV -
  RHN82_RS01865 (RHN82_01865) - 348735..349181 (+) 447 WP_003858149.1 YccF domain-containing protein -
  RHN82_RS01870 (RHN82_01870) yccS 349200..351362 (+) 2163 WP_047051698.1 YccS family putative transporter -
  RHN82_RS01875 (RHN82_01875) sxy/tfoX 351319..351945 (-) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  RHN82_RS01880 (RHN82_01880) sulA 352163..352672 (+) 510 WP_047051722.1 SOS-induced cell division inhibitor SulA -
  RHN82_RS01885 (RHN82_01885) ompA 353029..354081 (+) 1053 WP_017694761.1 porin OmpA -
  RHN82_RS01890 (RHN82_01890) matP 354147..354599 (-) 453 WP_003858158.1 macrodomain Ter protein MatP -
  RHN82_RS01895 (RHN82_01895) - 354786..356546 (+) 1761 WP_047051699.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=877251 RHN82_RS01875 WP_023299743.1 351319..351945(-) (sxy/tfoX) [Enterobacter cloacae complex sp. EB5]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=877251 RHN82_RS01875 WP_023299743.1 351319..351945(-) (sxy/tfoX) [Enterobacter cloacae complex sp. EB5]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCTGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACATTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGAGCAAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572