Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RHA96_RS15815 Genome accession   NZ_CP133852
Coordinates   2734573..2735187 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2729573..2740187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHA96_RS15800 (RHA96_15795) helD 2729797..2731851 (-) 2055 WP_139935274.1 DNA helicase IV -
  RHA96_RS15805 (RHA96_15800) - 2731977..2732423 (+) 447 WP_003035892.1 YccF domain-containing protein -
  RHA96_RS15810 (RHA96_15805) yccS 2732442..2734595 (+) 2154 WP_182316891.1 YccS family putative transporter -
  RHA96_RS15815 (RHA96_15810) sxy/tfoX 2734573..2735187 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  RHA96_RS15820 (RHA96_15815) sulA 2735405..2735914 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  RHA96_RS15825 (RHA96_15820) ompA 2736272..2737318 (+) 1047 WP_003035883.1 porin OmpA -
  RHA96_RS15830 (RHA96_15825) matP 2737407..2737859 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  RHA96_RS15835 (RHA96_15830) - 2738045..2739805 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=877176 RHA96_RS15815 WP_003035889.1 2734573..2735187(-) (sxy/tfoX) [Citrobacter freundii strain CF2]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=877176 RHA96_RS15815 WP_003035889.1 2734573..2735187(-) (sxy/tfoX) [Citrobacter freundii strain CF2]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686