Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   WHC13_RS08285 Genome accession   NZ_CP150487
Coordinates   1572368..1573393 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain JNF2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567368..1578393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS08250 (WHC13_08250) ylbE 1567668..1567907 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHC13_RS08255 (WHC13_08255) ylbF 1568023..1568472 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHC13_RS08260 (WHC13_08260) ylbG 1568527..1568799 (+) 273 WP_009967171.1 YlbG family protein -
  WHC13_RS08265 (WHC13_08265) rsmD 1569122..1569676 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHC13_RS08270 (WHC13_08270) coaD 1569681..1570166 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHC13_RS08275 (WHC13_08275) spoVV 1570177..1571403 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHC13_RS08280 (WHC13_08280) ylbK 1571584..1572366 (+) 783 WP_003232221.1 patatin family protein -
  WHC13_RS08285 (WHC13_08285) sepM 1572368..1573393 (+) 1026 WP_003245451.1 protease DdcP Regulator
  WHC13_RS08290 (WHC13_08290) ylbM 1573410..1574657 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  WHC13_RS08295 (WHC13_08295) - 1574654..1574839 (-) 186 WP_003232215.1 hypothetical protein -
  WHC13_RS08300 (WHC13_08300) ylbN 1574867..1575385 (+) 519 WP_003232214.1 DUF177 domain-containing protein -
  WHC13_RS08305 (WHC13_08305) rpmF 1575407..1575586 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  WHC13_RS08310 (WHC13_08310) gerR 1575732..1576313 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  WHC13_RS08315 (WHC13_08315) ylbP 1576370..1576852 (-) 483 WP_003244940.1 N-acetyltransferase -
  WHC13_RS08320 (WHC13_08320) - 1577012..1577908 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=877141 WHC13_RS08285 WP_003245451.1 1572368..1573393(+) (sepM) [Bacillus subtilis strain JNF2]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=877141 WHC13_RS08285 WP_003245451.1 1572368..1573393(+) (sepM) [Bacillus subtilis strain JNF2]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402