Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RHS40_RS08675 Genome accession   NZ_CP133836
Coordinates   1866240..1867769 (-) Length   509 a.a.
NCBI ID   WP_005752075.1    Uniprot ID   -
Organism   Pasteurella multocida strain sample-B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1861240..1872769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS40_RS08655 (RHS40_08655) - 1862554..1863237 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RHS40_RS08660 (RHS40_08660) envC 1863420..1864649 (+) 1230 WP_162836626.1 murein hydrolase activator EnvC -
  RHS40_RS08665 (RHS40_08665) - 1864646..1865479 (+) 834 WP_005752073.1 divergent polysaccharide deacetylase family protein -
  RHS40_RS08670 (RHS40_08670) - 1865500..1866186 (+) 687 WP_016534167.1 hypothetical protein -
  RHS40_RS08675 (RHS40_08675) comM 1866240..1867769 (-) 1530 WP_005752075.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RHS40_RS08680 (RHS40_08680) yihA 1867877..1868494 (-) 618 WP_005752076.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RHS40_RS08685 (RHS40_08685) - 1868605..1869474 (+) 870 WP_005735564.1 VirK/YbjX family protein -
  RHS40_RS08690 (RHS40_08690) trmL 1869548..1870024 (-) 477 WP_005752079.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RHS40_RS08695 (RHS40_08695) - 1870132..1871172 (-) 1041 WP_005752919.1 hypothetical protein -
  RHS40_RS08700 (RHS40_08700) - 1871196..1872716 (-) 1521 WP_071543611.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55943.40 Da        Isoelectric Point: 9.6875

>NTDB_id=877076 RHS40_RS08675 WP_005752075.1 1866240..1867769(-) (comM) [Pasteurella multocida strain sample-B]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSHQDTYFAQHL
LEVVNFLNDHATLPLASDLPTQHDLALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=877076 RHS40_RS08675 WP_005752075.1 1866240..1867769(-) (comM) [Pasteurella multocida strain sample-B]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCCCAATTTAAATACCCAGCTAAACGGATCACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCGCTAACGGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCATCAAGACACCTATTTTGCCCAACATTTA
CTAGAGGTCGTCAATTTTCTCAATGATCATGCTACGTTACCTTTAGCCTCAGATCTGCCCACACAACATGATCTGGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCTTTAACCATTGCTGCCGCAG
GGCAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAGCGCCCATTTCGTGCCCCTCATCACAGTGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGAG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTTGATGAGTTACCGGAATTTGAACGCAAAGTATTGGATGCCTTACGC
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTACGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTCCCCAAAGGCGCGTTACAACAG
CAAACAGATCGGGGCGAAAGTAGCGCACAAGTGAGGGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGCGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAGA
ATGCCTTAGCCAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGTACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTAGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.479

100

0.845
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Vibrio cholerae strain A1552

65.945

99.804

0.658
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.124

100

0.468