Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   RHO06_RS06525 Genome accession   NZ_CP133807
Coordinates   1418886..1419431 (-) Length   181 a.a.
NCBI ID   WP_010907447.1    Uniprot ID   -
Organism   Pasteurella multocida strain W22-2894-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413886..1424431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO06_RS06500 (RHO06_06500) - 1414104..1414541 (-) 438 WP_010907449.1 isoprenylcysteine carboxylmethyltransferase family protein -
  RHO06_RS06505 (RHO06_06505) - 1414746..1415357 (-) 612 WP_005725137.1 YfgM family protein -
  RHO06_RS06510 (RHO06_06510) hisS 1415376..1416647 (-) 1272 WP_010907448.1 histidine--tRNA ligase -
  RHO06_RS06515 (RHO06_06515) ispG 1416677..1417780 (-) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  RHO06_RS06520 (RHO06_06520) - 1417807..1418763 (-) 957 WP_005725132.1 RodZ family helix-turn-helix domain-containing protein -
  RHO06_RS06525 (RHO06_06525) pilF/pilF2 1418886..1419431 (-) 546 WP_010907447.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  RHO06_RS06530 (RHO06_06530) - 1419470..1420654 (-) 1185 WP_010907446.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  RHO06_RS06535 (RHO06_06535) - 1420834..1423200 (-) 2367 WP_010907445.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20911.47 Da        Isoelectric Point: 7.8913

>NTDB_id=876935 RHO06_RS06525 WP_010907447.1 1418886..1419431(-) (pilF/pilF2) [Pasteurella multocida strain W22-2894-7]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=876935 RHO06_RS06525 WP_010907447.1 1418886..1419431(-) (pilF/pilF2) [Pasteurella multocida strain W22-2894-7]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50

97.238

0.486
  pilF Glaesserella parasuis strain SC1401

43.85

100

0.453