Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   RHO06_RS01625 Genome accession   NZ_CP133807
Coordinates   342276..344669 (+) Length   797 a.a.
NCBI ID   WP_310842069.1    Uniprot ID   -
Organism   Pasteurella multocida strain W22-2894-7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337276..349669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHO06_RS01600 (RHO06_01600) - 337497..338207 (-) 711 WP_016533716.1 vancomycin high temperature exclusion protein -
  RHO06_RS01605 (RHO06_01605) - 338370..339452 (+) 1083 WP_005716866.1 homoserine O-acetyltransferase -
  RHO06_RS01610 (RHO06_01610) folK 339439..339936 (-) 498 WP_014391244.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RHO06_RS01615 (RHO06_01615) pcnB 339948..341453 (-) 1506 WP_016533715.1 polynucleotide adenylyltransferase PcnB -
  RHO06_RS01620 (RHO06_01620) dksA 341542..341979 (-) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  RHO06_RS01625 (RHO06_01625) rec2 342276..344669 (+) 2394 WP_310842069.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHO06_RS01630 (RHO06_01630) msbA 344722..346470 (+) 1749 WP_005754315.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  RHO06_RS01635 (RHO06_01635) lpxK 346502..347479 (+) 978 WP_078819611.1 tetraacyldisaccharide 4'-kinase -
  RHO06_RS01640 (RHO06_01640) - 347491..347673 (+) 183 WP_310842070.1 Trm112 family protein -
  RHO06_RS01645 (RHO06_01645) kdsB 347675..348451 (+) 777 WP_005756949.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90923.31 Da        Isoelectric Point: 9.7400

>NTDB_id=876930 RHO06_RS01625 WP_310842069.1 342276..344669(+) (rec2) [Pasteurella multocida strain W22-2894-7]
MKNSLLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLLAWFYAELAGFSIPTSRAFFALTVVSWVKLWRCSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITESPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDLKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVVISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQHLTFKALSPTKIVKRAKNTDSCVLLISDGSHHILLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIGIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=876930 RHO06_RS01625 WP_310842069.1 342276..344669(+) (rec2) [Pasteurella multocida strain W22-2894-7]
ATGAAAAACTCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCATGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTACCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCAGCACAATTGTCTCCACAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACAGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCGCTAG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTGGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGTGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATACGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTAAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGTCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGAG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATATCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACGGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGGGATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Competence protein (Competence)

(213-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.939

100

0.511