Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WHK83_RS10005 Genome accession   NZ_CP150097
Coordinates   2144397..2145032 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain HAU425     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139397..2150032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS09980 - 2139453..2140433 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  WHK83_RS09985 kdsB 2140445..2141206 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WHK83_RS09990 lpxK 2141216..2142226 (-) 1011 WP_023896834.1 tetraacyldisaccharide 4'-kinase -
  WHK83_RS09995 msbA 2142229..2143956 (-) 1728 WP_023896835.1 lipid A export permease/ATP-binding protein MsbA -
  WHK83_RS10000 - 2143953..2144381 (-) 429 WP_000669685.1 biopolymer transporter ExbD -
  WHK83_RS10005 exbB 2144397..2145032 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WHK83_RS10010 - 2145082..2145969 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  WHK83_RS10015 - 2145966..2146748 (-) 783 WP_000057212.1 ParA family protein -
  WHK83_RS10020 rsmG 2146770..2147402 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  WHK83_RS10025 murU 2147490..2148179 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  WHK83_RS10030 - 2148179..2149192 (-) 1014 WP_023896837.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=876852 WHK83_RS10005 WP_000264037.1 2144397..2145032(-) (exbB) [Acinetobacter baumannii strain HAU425]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876852 WHK83_RS10005 WP_000264037.1 2144397..2145032(-) (exbB) [Acinetobacter baumannii strain HAU425]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCCTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAAAGTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393