Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RF667_RS12385 Genome accession   NZ_CP133786
Coordinates   2526574..2528373 (-) Length   599 a.a.
NCBI ID   WP_016380983.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain KCKM 0245     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521574..2533373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF667_RS12355 (RF667_12355) - 2521664..2522695 (+) 1032 WP_016380987.1 hypothetical protein -
  RF667_RS12360 (RF667_12360) - 2522848..2523192 (+) 345 WP_003563007.1 hypothetical protein -
  RF667_RS12365 (RF667_12365) - 2523266..2523985 (+) 720 WP_003563009.1 metal ABC transporter ATP-binding protein -
  RF667_RS12370 (RF667_12370) - 2523982..2524779 (+) 798 WP_003563011.1 metal ABC transporter permease -
  RF667_RS12375 (RF667_12375) - 2524851..2525699 (-) 849 WP_016380985.1 metallophosphoesterase -
  RF667_RS12380 (RF667_12380) - 2525696..2526577 (-) 882 WP_016380984.1 NAD(P)-dependent oxidoreductase -
  RF667_RS12385 (RF667_12385) pepF 2526574..2528373 (-) 1800 WP_016380983.1 oligoendopeptidase F Regulator
  RF667_RS12390 (RF667_12390) - 2528502..2529596 (+) 1095 WP_194959078.1 LCP family protein -
  RF667_RS12395 (RF667_12395) brnQ 2529747..2531126 (-) 1380 WP_194959079.1 branched-chain amino acid transport system II carrier protein -
  RF667_RS12400 (RF667_12400) - 2531341..2532756 (+) 1416 WP_003600251.1 IS5-like element ISLca2 family transposase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67266.38 Da        Isoelectric Point: 5.6384

>NTDB_id=876846 RF667_RS12385 WP_016380983.1 2526574..2528373(-) (pepF) [Lacticaseibacillus paracasei strain KCKM 0245]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAAELASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEEILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=876846 RF667_RS12385 WP_016380983.1 2526574..2528373(-) (pepF) [Lacticaseibacillus paracasei strain KCKM 0245]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACCGAATTGACATGGGATCTCACGACCATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCGGCTGAACTTGCCAGCCA
ATTAGCGTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGTTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGTCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCTAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGCCAACTCATTCGGTCAACAAATCGCAAGCTGCGTAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTAAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCACGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACATTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATCCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCTGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCA
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATTGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAGAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513