Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   WHK83_RS03200 Genome accession   NZ_CP150097
Coordinates   668054..668569 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain HAU425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 663054..673569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHK83_RS03175 - 663601..665244 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  WHK83_RS03180 - 665237..665722 (+) 486 WP_000935250.1 DUF934 domain-containing protein -
  WHK83_RS03185 - 665804..666157 (+) 354 WP_000457781.1 multidrug efflux SMR transporter -
  WHK83_RS03190 - 666200..666643 (-) 444 WP_001176580.1 VOC family protein -
  WHK83_RS03195 - 666770..667945 (-) 1176 WP_000129968.1 thiolase family protein -
  WHK83_RS03200 fimT 668054..668569 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  WHK83_RS03205 omp38 668951..670021 (+) 1071 WP_002046685.1 outer membrane protein Omp38 -
  WHK83_RS03210 - 670146..670304 (-) 159 WP_000692859.1 hypothetical protein -
  WHK83_RS03215 - 670308..671513 (-) 1206 WP_023896239.1 RtcB family protein -
  WHK83_RS03220 - 671791..673251 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=876831 WHK83_RS03200 WP_000477151.1 668054..668569(-) (fimT) [Acinetobacter baumannii strain HAU425]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=876831 WHK83_RS03200 WP_000477151.1 668054..668569(-) (fimT) [Acinetobacter baumannii strain HAU425]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427