Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM55_RS11340 Genome accession   NZ_CP133784
Coordinates   2424498..2425865 (-) Length   455 a.a.
NCBI ID   WP_322182062.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2419498..2430865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS11315 (RHM55_11315) - 2419584..2420216 (-) 633 WP_416152018.1 CsgG/HfaB family protein -
  RHM55_RS25910 - 2420817..2421689 (-) 873 WP_416152019.1 methyl-accepting chemotaxis protein -
  RHM55_RS25915 - 2421720..2422760 (-) 1041 Protein_2245 methyl-accepting chemotaxis protein -
  RHM55_RS11325 (RHM55_11325) - 2423056..2423553 (+) 498 WP_322182061.1 TonB-dependent receptor domain-containing protein -
  RHM55_RS11330 (RHM55_11330) - 2423772..2423969 (-) 198 WP_322183164.1 hypothetical protein -
  RHM55_RS11340 (RHM55_11340) radA 2424498..2425865 (-) 1368 WP_322182062.1 DNA repair protein RadA Machinery gene
  RHM55_RS11345 (RHM55_11345) - 2426018..2427559 (-) 1542 WP_322182065.1 catalase -
  RHM55_RS11350 (RHM55_11350) mscL 2427829..2428278 (+) 450 WP_322182067.1 large-conductance mechanosensitive channel protein MscL -
  RHM55_RS11355 (RHM55_11355) - 2428315..2429091 (-) 777 WP_322182069.1 ferredoxin--NADP reductase -
  RHM55_RS11360 (RHM55_11360) - 2429474..2429941 (+) 468 WP_322182071.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48761.27 Da        Isoelectric Point: 7.1318

>NTDB_id=876778 RHM55_RS11340 WP_322182062.1 2424498..2425865(-) (radA) [Pseudomonas sp. MH9.2]
MAKAKRMFGCTECGATFPKWAGQCGECGAWNTLVETLLGSGAATPPSGRSGWTGQQAQIRTLAEVSVQEVPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAERMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARIEQPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVSRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=876778 RHM55_RS11340 WP_322182062.1 2424498..2425865(-) (radA) [Pseudomonas sp. MH9.2]
ATGGCCAAGGCTAAGCGCATGTTCGGCTGTACCGAGTGCGGTGCGACTTTTCCAAAGTGGGCGGGCCAGTGCGGCGAATG
TGGTGCCTGGAACACCCTGGTCGAGACCCTCCTGGGAAGCGGTGCCGCAACCCCTCCGAGCGGTCGCTCTGGCTGGACCG
GGCAGCAAGCGCAAATCAGGACCCTGGCTGAAGTCAGCGTCCAGGAAGTCCCCCGGTTCTCCACCAACTCTGCCGAGCTA
GATCGTGTGCTGGGCGGTGGCCTGGTCGATGGGTCGGTGGTGCTGATTGGCGGCGACCCTGGCATTGGCAAATCCACCAT
TCTCCTGCAAACCCTGTGCGCCATCGCCGAGCGGATGCCCGCGCTTTATGTCACCGGCGAAGAGTCGCAGCAACAGGTCG
CCATGCGCGCCCGACGCTTGGGTTTGCCCCAGGACAAGCTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGCATCGAGCAGCCCAAAGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCGCAAGTGCGCGAGAGCGCGGCGCTGTTGGTGCGGTACGCGAAACAGAGCGGTACCGCGATTTTCCTGG
TTGGGCATGTCACTAAAGAAGGCTCATTGGCCGGTCCTCGCGTGCTTGAACATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGACGGGCGTCTGCGTTTGTTGCGCGCCGTGAAAAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGATAAGGGCTTGAAAGAGGTCTCCAATCCTTCAGCGATTTTTCTGACCCGCGCTCAAGAAGAAGTTCCCGGCA
GTGTCGTCATGGCGACGTGGGAAGGCACCCGACCAATGCTGGTGGAAGTTCAGGCGCTGGTCGACGACAGTCACTTGGCC
AATCCACGCAGGGTCACCCTTGGTCTGGATCAGAACCGTCTGGCCATGCTGCTGGCCGTCCTGCATCGCCACGGCGGGAT
TCCTACCCATGATCAGGACGTATTCCTCAACGTGGTCGGCGGGGTGAAAGTACTGGAAACCGCCTCCGACCTCGCCTTGA
TGGCCGCTGTCATGTCCAGCCTGCGCAACCGCCCGCTGCCCCACGACTTGCTGGTGTTCGGTGAAGTTGGCCTCTCCGGC
GAAGTCCGCCCGGTGCCCAGCGGTCAGGAACGGTTGAAAGAAGCGGCTAAACACGGCTTCAAACGCGCCATCGTCCCCAA
AGGCAACGCCCCCAAGGAAGCGCCTCCGGGGTTGCAGATCATTGCCGTGAGCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

99.56

0.488
  radA Streptococcus pneumoniae Rx1

46.957

100

0.475
  radA Streptococcus pneumoniae R6

46.957

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.957

100

0.475
  radA Streptococcus pneumoniae D39

46.957

100

0.475
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47