Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM59_RS20590 Genome accession   NZ_CP133783
Coordinates   4585380..4586747 (+) Length   455 a.a.
NCBI ID   WP_322285295.1    Uniprot ID   -
Organism   Pseudomonas sp. MH10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4580380..4591747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM59_RS20560 (RHM59_20560) cydB 4580637..4581644 (+) 1008 WP_322166155.1 cytochrome d ubiquinol oxidase subunit II -
  RHM59_RS20565 (RHM59_20565) - 4581658..4581825 (+) 168 WP_322166154.1 DUF2474 domain-containing protein -
  RHM59_RS20570 (RHM59_20570) - 4581994..4583118 (-) 1125 WP_322184833.1 methyltransferase -
  RHM59_RS20575 (RHM59_20575) - 4583243..4583710 (-) 468 WP_322184835.1 helix-turn-helix transcriptional regulator -
  RHM59_RS20580 (RHM59_20580) - 4583906..4584682 (+) 777 WP_322184837.1 ferredoxin--NADP reductase -
  RHM59_RS20585 (RHM59_20585) mscL 4584736..4585185 (-) 450 WP_322166150.1 large-conductance mechanosensitive channel protein MscL -
  RHM59_RS20590 (RHM59_20590) radA 4585380..4586747 (+) 1368 WP_322285295.1 DNA repair protein RadA Machinery gene
  RHM59_RS20595 (RHM59_20595) - 4586855..4587223 (-) 369 WP_322166148.1 PilZ domain-containing protein -
  RHM59_RS20600 (RHM59_20600) - 4587430..4589535 (+) 2106 WP_322285296.1 carbon starvation CstA family protein -
  RHM59_RS20605 (RHM59_20605) - 4589528..4589725 (+) 198 WP_322166146.1 YbdD/YjiX family protein -
  RHM59_RS20610 (RHM59_20610) yjiA 4589800..4590780 (+) 981 WP_322166145.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48928.45 Da        Isoelectric Point: 6.5051

>NTDB_id=876756 RHM59_RS20590 WP_322285295.1 4585380..4586747(+) (radA) [Pseudomonas sp. MH10]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETMLENGAATPPSGRTGWTGQKAQIRTLAEVSVEEMPRFTTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCALAEQMPALYVTGEESQQQVAMRARRLGLAQDKLRVMTETCIETIIA
TARIEQPKVMVIDSIQTIYTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAEEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVISSLRNRPLPHDLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=876756 RHM59_RS20590 WP_322285295.1 4585380..4586747(+) (radA) [Pseudomonas sp. MH10]
ATGGCCAAGGCTAAGCGCATGTATGGCTGCACGGAGTGCGGGGCGACTTTTCCGAAATGGGCTGGCCAGTGCGGCGAATG
CGGCGCCTGGAACACCTTGGTCGAAACGATGCTTGAAAATGGTGCCGCCACGCCACCCAGCGGACGTACCGGCTGGACCG
GGCAAAAAGCACAGATCAGAACCTTGGCCGAAGTCAGCGTCGAGGAGATGCCGCGATTTACCACTAACTCCACCGAACTC
GACCGGGTACTCGGCGGCGGTTTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGTAAATCCACCAT
TCTGTTGCAAACCCTTTGCGCGCTGGCTGAGCAAATGCCCGCGCTGTACGTCACCGGCGAAGAATCGCAGCAGCAAGTTG
CCATGCGCGCTCGTCGTTTGGGGCTGGCGCAAGACAAACTTCGGGTCATGACCGAAACCTGTATCGAAACCATTATTGCC
ACGGCGCGCATCGAACAGCCCAAGGTCATGGTCATCGACTCGATCCAGACCATTTACACCGAACAATTGCAGTCCGCGCC
GGGCGGCGTGTCACAAGTGCGTGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAACAAAGCGGTACCGCGATTTTCCTCG
TGGGTCACGTCACCAAAGAAGGCGCACTGGCCGGGCCGCGTGTTCTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAGTCAGACGGTCGTCTGCGCCTGCTGCGCGCGGTAAAGAATCGGTTTGGTGCGGTCAATGAGTTGGGCGTGTTTGG
CATGACCGACAAAGGCTTGAAAGAAGTCTCTAACCCCTCGGCAATTTTCCTGACGCGTGCCGAAGAAGAAGTGCCCGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACTCGGCCGATGCTGGTGGAGGTTCAGGCGTTGGTGGATGACAGCCATTTGGCC
AATCCACGTCGGGTCACTCTCGGCCTGGACCAGAATCGTCTGGCCATGTTGCTCGCAGTCTTGCATCGCCACGGCGGTAT
TCCTACCCATGATCAGGATGTGTTTCTGAACGTGGTCGGCGGCGTGAAAGTATTGGAGACAGCTTCAGATCTGGCGCTGA
TGGCGGCCGTTATCTCCAGCCTGCGTAACCGGCCGCTGCCCCACGACCTGCTGGTGTTCGGAGAAATCGGCTTGTCAGGC
GAAGTCCGCCCGGTGCCGAGCGGTCAAGAGCGTTTGAAAGAAGCGGCCAAGCATGGCTTCAAGCGGGCTATCGTGCCCAA
AGGCAATGCACCCAAAGAAGCGCCGCCAGGGCTGCAAGTGATAGCAGTCACCCGACTTGAGCAGGCGTTGGACGCCTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.007

99.56

0.488
  radA Streptococcus pneumoniae Rx1

47.391

100

0.479
  radA Streptococcus pneumoniae R6

47.391

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.391

100

0.479
  radA Streptococcus pneumoniae D39

47.391

100

0.479
  radA Streptococcus mitis SK321

47.588

100

0.477
  radA Streptococcus mitis NCTC 12261

47.368

100

0.475