Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM68_RS21675 Genome accession   NZ_CP133782
Coordinates   4789595..4790962 (-) Length   455 a.a.
NCBI ID   WP_322219011.1    Uniprot ID   -
Organism   Pseudomonas sp. DC1.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4784595..4795962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS21650 (RHM68_21650) - 4784831..4785400 (+) 570 WP_322219002.1 hypothetical protein -
  RHM68_RS21655 (RHM68_21655) yjiA 4785611..4786582 (-) 972 WP_322219004.1 GTPase -
  RHM68_RS21660 (RHM68_21660) - 4786744..4786941 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  RHM68_RS21665 (RHM68_21665) - 4786957..4789023 (-) 2067 WP_322219008.1 carbon starvation CstA family protein -
  RHM68_RS21670 (RHM68_21670) - 4789183..4789551 (+) 369 WP_322219010.1 PilZ domain-containing protein -
  RHM68_RS21675 (RHM68_21675) radA 4789595..4790962 (-) 1368 WP_322219011.1 DNA repair protein RadA Machinery gene
  RHM68_RS21680 (RHM68_21680) - 4791008..4791562 (-) 555 WP_322219013.1 ankyrin repeat domain-containing protein -
  RHM68_RS21685 (RHM68_21685) katB 4791621..4793162 (-) 1542 WP_322219015.1 catalase KatB -
  RHM68_RS21690 (RHM68_21690) mscL 4793450..4793863 (+) 414 WP_322219017.1 large-conductance mechanosensitive channel protein MscL -
  RHM68_RS21695 (RHM68_21695) - 4793915..4794691 (-) 777 WP_322219019.1 ferredoxin--NADP reductase -
  RHM68_RS21700 (RHM68_21700) - 4795062..4795775 (+) 714 WP_322219021.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48817.31 Da        Isoelectric Point: 7.1316

>NTDB_id=876726 RHM68_RS21675 WP_322219011.1 4789595..4790962(-) (radA) [Pseudomonas sp. DC1.2]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAVAPSGRTGWTGQQAQIRTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=876726 RHM68_RS21675 WP_322219011.1 4789595..4790962(-) (radA) [Pseudomonas sp. DC1.2]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCTCAACTTTCCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGGGCGGTAGCGCCCAGCGGCCGTACCGGTTGGACCG
GCCAGCAGGCACAGATCAGGACCCTGGCTGAAGTCAGTGTCGAGGAAATCCCGCGCTTTTCTACGGCCTCCAGTGAACTC
GATCGTGTACTGGGCGGTGGTCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGTGATCCCGGCATTGGCAAATCGACCAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTATACGTCACGGGCGAAGAATCCCAACAGCAGGTGG
CCATGCGTGCCCGTCGCTTGGGCTTGCCTCAGGACAAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACGGCCCGCCAGGAAAAGCCCAAGGTCATGGTGATTGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCACC
GGGTGGCGTCTCTCAGGTACGCGAAAGCGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGTGGCACGGCGATTTTTCTGG
TCGGTCATGTGACGAAAGAAGGCGCGTTGGCGGGCCCTCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTCGAA
GGCGAATCCGATGGTCGGTTGCGCTTGCTCAGGGCTGTAAAAAACCGTTTTGGCGCGGTGAATGAGCTGGGTGTCTTTGG
CATGACGGACAAGGGCCTGAAAGAAGTCTCCAATCCATCGGCGATTTTTCTCACCCGTGCTCAGGAAGAGGTTCCGGGCA
GCGTGGTCATGGCTACGTGGGAAGGTACTCGGCCGATGCTGGTGGAGGTTCAAGCGTTAGTCGACGACAGCCATTTGGCC
AATCCACGTCGGGTGACGCTGGGGCTGGATCAGAACCGACTGGCCATGTTACTGGCGGTGTTGCACCGTCACGGCGGCAT
ACCGACCCACGATCAAGACGTATTTCTCAATGTGGTGGGTGGGGTCAAAGTCCTGGAGACGGCTTCCGACCTGGCGCTGA
TGGCGGCTGTAATGTCCAGTTTACGCAACCGGCCGCTGCCGCACGATTTGCTGGTTTTTGGGGAAGTGGGGTTGTCGGGT
GAAGTGCGCCCGGTGCCAAGTGGCCAGGAACGCTTGAAAGAGGCGGCCAAACACGGTTTCAAGCGCGCTATCGTGCCCAA
GGGTAACGCGCCTAAAGAAGCGCCGCCTGGGTTGCAGATCATTGCCGTGACCCGCCTCGAACAGGCGCTAGATGCCTTGT
TCGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466