Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM61_RS13605 Genome accession   NZ_CP133779
Coordinates   3056611..3057990 (+) Length   459 a.a.
NCBI ID   WP_322247844.1    Uniprot ID   A0AAU0S552
Organism   Undibacterium sp. CCC3.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3051611..3062990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS13575 (RHM61_13570) - 3051701..3052138 (-) 438 WP_322247838.1 thioredoxin family protein -
  RHM61_RS13580 (RHM61_13575) tsaB 3052209..3052913 (+) 705 WP_322247839.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  RHM61_RS13585 (RHM61_13580) rimI 3052921..3053385 (+) 465 WP_322247840.1 ribosomal protein S18-alanine N-acetyltransferase -
  RHM61_RS13590 (RHM61_13585) - 3053382..3054215 (+) 834 WP_322247841.1 uracil-DNA glycosylase -
  RHM61_RS13595 (RHM61_13590) - 3054215..3055174 (+) 960 WP_322247842.1 DUF1853 family protein -
  RHM61_RS13600 (RHM61_13595) lplT 3055180..3056442 (-) 1263 WP_322247843.1 lysophospholipid transporter LplT -
  RHM61_RS13605 (RHM61_13600) radA 3056611..3057990 (+) 1380 WP_322247844.1 DNA repair protein RadA Machinery gene
  RHM61_RS13610 (RHM61_13605) hpnE 3058018..3059334 (-) 1317 WP_322247845.1 hydroxysqualene dehydroxylase HpnE -
  RHM61_RS13615 (RHM61_13610) hpnD 3059327..3060160 (-) 834 WP_322247846.1 presqualene diphosphate synthase HpnD -
  RHM61_RS13620 (RHM61_13615) - 3060404..3061285 (+) 882 WP_322247847.1 hypothetical protein -
  RHM61_RS13625 (RHM61_13620) - 3061390..3062094 (-) 705 WP_322247848.1 M24 family metallopeptidase -
  RHM61_RS13630 (RHM61_13625) - 3062140..3062286 (-) 147 WP_322247849.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48903.52 Da        Isoelectric Point: 7.1757

>NTDB_id=876702 RHM61_RS13605 WP_322247844.1 3056611..3057990(+) (radA) [Undibacterium sp. CCC3.4]
MAKAKTNYTCTECGGIGNKWAGQCPACGQWNTLVETLVEAPGNRFSARPQSLAQTAPVLNLADIEAADVPRFGTGIEEFD
RVLGGGLVSGGVVLIGGDPGIGKSTLLLQALANLAQLKKVLYVSGEESGAQIALRSHRLGLRTDGLALQAEIQLEKILQT
LAEHRPQVVVIDSIQTMYSDALSSAPGSVAQVRECASQLTRLAKTMDITMILVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNELGVFAMTERGLKGVANPSALFLSQHETQVAGSCVMVTQEGTRPLLVEIQALVDSSHAPN
ARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVGGVKIAEPAADLAVLLAINSSMRNKPLPRSLVVFGEVGLAGE
IRPAPRGQERLKEAAKLGFTIAMIPKANAPKQKIEGLTIIAVDRIDEAMNKIREIDDMT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=876702 RHM61_RS13605 WP_322247844.1 3056611..3057990(+) (radA) [Undibacterium sp. CCC3.4]
ATGGCAAAGGCAAAAACAAATTACACCTGTACCGAATGTGGTGGTATTGGCAATAAATGGGCTGGACAGTGTCCAGCTTG
CGGGCAATGGAATACCTTGGTGGAAACCTTGGTCGAAGCGCCGGGAAATCGGTTTTCGGCGCGTCCGCAAAGTTTGGCGC
AAACCGCGCCGGTACTTAATTTGGCCGATATTGAGGCGGCCGATGTGCCGCGCTTTGGCACCGGCATTGAAGAATTCGAC
CGGGTGCTGGGCGGTGGCTTGGTGTCGGGTGGGGTGGTGCTGATCGGTGGCGATCCCGGTATCGGCAAATCGACCTTGTT
GTTGCAGGCTTTGGCGAATTTGGCGCAGCTAAAAAAGGTCTTGTATGTCAGCGGCGAAGAGTCGGGGGCTCAGATTGCCT
TACGTTCGCACCGCCTCGGTTTGCGTACCGATGGCTTGGCCTTGCAGGCGGAAATCCAATTGGAAAAAATTCTGCAAACC
TTGGCCGAGCATCGGCCGCAGGTGGTGGTCATTGATTCTATTCAAACCATGTATTCGGATGCACTCAGTTCGGCACCCGG
TTCGGTGGCACAGGTGCGCGAATGTGCCTCGCAATTGACGCGCCTCGCCAAGACCATGGATATCACCATGATTTTGGTTG
GCCATGTGACTAAGGAAGGTGCCTTGGCTGGTCCGCGTGTGCTTGAGCATATCGTCGATACGGTATTGTATTTCGAAGGT
GATACCCACTCCAGTTTCCGTTTGGTGCGCGCTATCAAGAACCGTTTCGGTGCCGTCAATGAACTCGGTGTCTTCGCCAT
GACCGAGCGCGGCCTCAAGGGTGTGGCTAACCCGTCGGCGCTGTTTCTGTCGCAGCACGAGACGCAAGTGGCCGGTTCTT
GCGTCATGGTTACGCAAGAAGGGACTCGTCCTTTATTGGTGGAAATACAAGCTTTGGTCGACAGCTCGCACGCCCCGAAT
GCGCGCCGTCTGTCGGTTGGTTTGGAGCAAAACCGCTTGGCGATGTTATTGGCCGTGTTGCACCGCCATGCGGGCGTGGC
GGCATTTGACCAAGATGTGTTTATCAATGCCGTCGGCGGCGTGAAAATCGCCGAACCGGCGGCCGATCTGGCGGTCTTGC
TGGCGATAAATTCCTCCATGCGCAATAAGCCTTTGCCGCGCAGCTTGGTCGTGTTCGGTGAAGTCGGACTGGCCGGCGAG
ATACGACCAGCCCCTCGAGGTCAAGAGCGGCTTAAGGAAGCGGCGAAACTCGGTTTCACCATTGCCATGATTCCGAAAGC
CAATGCACCGAAGCAGAAAATTGAAGGCTTGACTATCATCGCTGTCGATCGTATCGATGAGGCGATGAATAAAATCCGTG
AGATCGACGATATGACGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.231

99.129

0.488
  radA Streptococcus mitis SK321

47.38

99.782

0.473
  radA Streptococcus pneumoniae Rx1

47.38

99.782

0.473
  radA Streptococcus pneumoniae TIGR4

47.38

99.782

0.473
  radA Streptococcus pneumoniae D39

47.38

99.782

0.473
  radA Streptococcus pneumoniae R6

47.38

99.782

0.473
  radA Streptococcus mitis NCTC 12261

47.368

99.346

0.471