Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RHM61_RS03930 Genome accession   NZ_CP133779
Coordinates   869717..871195 (+) Length   492 a.a.
NCBI ID   WP_322249843.1    Uniprot ID   A0AAU0SAS2
Organism   Undibacterium sp. CCC3.4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864717..876195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS03905 (RHM61_03905) - 866117..867184 (+) 1068 WP_322249835.1 KpsF/GutQ family sugar-phosphate isomerase -
  RHM61_RS03910 (RHM61_03910) - 867184..867708 (+) 525 WP_322249837.1 HAD family hydrolase -
  RHM61_RS03915 (RHM61_03915) lptC 867705..868331 (+) 627 WP_322249839.1 LPS export ABC transporter periplasmic protein LptC -
  RHM61_RS03920 (RHM61_03920) lptA 868388..868951 (+) 564 WP_322249840.1 lipopolysaccharide transport periplasmic protein LptA -
  RHM61_RS03925 (RHM61_03925) lptB 868953..869705 (+) 753 WP_322249842.1 LPS export ABC transporter ATP-binding protein -
  RHM61_RS03930 (RHM61_03930) rpoN/rpoN1 869717..871195 (+) 1479 WP_322249843.1 RNA polymerase factor sigma-54 Machinery gene
  RHM61_RS03935 (RHM61_03935) hpf 871309..871653 (+) 345 WP_322249844.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RHM61_RS03940 (RHM61_03940) - 871772..872866 (+) 1095 WP_322249845.1 enoyl-CoA hydratase/isomerase family protein -
  RHM61_RS03945 (RHM61_03945) - 872920..873648 (-) 729 WP_322249846.1 ABC transporter ATP-binding protein -
  RHM61_RS03950 (RHM61_03950) - 873659..875620 (-) 1962 WP_322249847.1 branched-chain amino acid ABC transporter ATP-binding protein/permease -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 55074.16 Da        Isoelectric Point: 5.1666

>NTDB_id=876688 RHM61_RS03930 WP_322249843.1 869717..871195(+) (rpoN/rpoN1) [Undibacterium sp. CCC3.4]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELENLLLENPLLERVDDPLEHAVRLLADGAINSASSTPDAGMETA
LPQEAASASTEAVAEIEVPINDSVSAAQDDWSDVAPGQRNDDDDEGFRQLEASHISLREHLLEQMRLSLRIPRDLALVEL
IIDAIDDHGYLTETLDEIHASLPLELCVEAEELSFALCMVQSFDPPGVGARHVAECLALQIKRLPQIAFVTRRLALAIIE
TQLPLFAQRDFGKLKKIFDCDDEDLREAQTVIRMCQPRPGSSFALNSSDYVAPDVIVKKSANGWQVLLNQDVMPKLRVNN
MYANIMRQNRGDTCMAPQLQEARWLIKNMRQRFETILRVAQAIVERQRNFFTHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAEDQKSPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSMRKCF

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=876688 RHM61_RS03930 WP_322249843.1 869717..871195(+) (rpoN/rpoN1) [Undibacterium sp. CCC3.4]
ATGAAACAAAGCCTGCAACTTCGTACCTCCCAGCACTTGGCATTGACACCACAATTACAGCAATCGATACGCTTGCTGCA
ATTGTCAACCTTGGAGCTGCATCAGGAACTGGAAAATCTGCTGCTCGAGAATCCACTGCTCGAGCGCGTCGACGACCCGC
TCGAGCACGCCGTGCGTTTGTTGGCCGACGGTGCCATCAACAGCGCCAGCAGCACGCCTGATGCCGGCATGGAAACAGCG
TTGCCGCAGGAAGCCGCCAGTGCCAGCACAGAAGCAGTGGCCGAGATCGAGGTGCCGATCAATGACAGCGTCAGTGCCGC
TCAAGATGACTGGAGCGATGTCGCACCCGGCCAGCGCAACGATGATGACGATGAAGGCTTTCGTCAACTCGAAGCCAGTC
ATATCAGCCTGCGCGAACACTTGCTCGAACAAATGCGTCTGAGCTTGCGTATTCCGCGCGACTTGGCCTTGGTCGAATTG
ATCATCGATGCCATCGATGATCATGGCTACCTGACTGAGACGCTCGATGAAATTCATGCCAGCTTGCCGCTGGAATTATG
CGTCGAAGCCGAAGAGTTGTCATTTGCATTATGTATGGTGCAGAGCTTCGATCCACCCGGCGTCGGTGCGCGTCACGTGG
CCGAATGTTTGGCCCTGCAAATCAAACGCTTGCCGCAGATCGCCTTCGTCACGCGGCGACTGGCGCTGGCAATTATAGAA
ACACAACTGCCGCTGTTCGCCCAGCGCGATTTCGGCAAACTCAAAAAAATCTTCGATTGCGATGATGAAGACTTACGCGA
AGCGCAAACCGTGATCCGCATGTGCCAACCACGTCCAGGCAGCAGCTTTGCGCTCAACAGTTCCGACTATGTGGCACCGG
ACGTGATCGTCAAAAAATCAGCCAATGGCTGGCAAGTTTTACTCAATCAAGACGTGATGCCCAAGCTGCGGGTGAACAAT
ATGTATGCCAATATCATGCGCCAAAATCGCGGTGATACCTGTATGGCACCGCAGTTGCAAGAAGCACGTTGGTTGATCAA
AAATATGCGTCAACGTTTCGAAACAATTTTGCGTGTCGCCCAAGCGATAGTGGAAAGACAACGGAACTTTTTCACCCACG
GTGCCGTTGCCATGCGACCCCTTGTGTTGCGCGAAATAGCTGATACACTAGGTCTACACGAGAGCACTATTTCTCGTGTA
ACAACGCAAAAATACATGCTCACCCCGCATGGTATGTTTGAGTTGAAGTATTTTTTCGGCAGTCATGTAGCGACGGAAAC
CGGCGGCGAAGCTTCATCCACCGCGATCCGCGCACTCATCAAGCAATTGATAGGAGCAGAAGACCAGAAAAGCCCACTCT
CTGACAGTAAAATCGCAGACATGCTGGGTGAACAGGGTATGGTGATTGCTCGGCGTACCGTTGCAAAATACCGTGAAGCT
CTGAAAATCCCCCCGGTCAGTATGCGTAAATGTTTTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.367

100

0.596