Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM56_RS01150 Genome accession   NZ_CP133778
Coordinates   236730..238097 (+) Length   455 a.a.
NCBI ID   WP_322237755.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231730..243097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS01125 (RHM56_01125) - 231883..232596 (-) 714 WP_322237743.1 LuxR family transcriptional regulator -
  RHM56_RS01130 (RHM56_01130) - 232974..233750 (+) 777 WP_322237745.1 ferredoxin--NADP reductase -
  RHM56_RS01135 (RHM56_01135) mscL 233814..234227 (-) 414 WP_322237748.1 large-conductance mechanosensitive channel protein MscL -
  RHM56_RS01140 (RHM56_01140) - 234498..236039 (+) 1542 WP_322237750.1 catalase -
  RHM56_RS01145 (RHM56_01145) - 236154..236690 (+) 537 WP_322237753.1 ankyrin repeat domain-containing protein -
  RHM56_RS01150 (RHM56_01150) radA 236730..238097 (+) 1368 WP_322237755.1 DNA repair protein RadA Machinery gene
  RHM56_RS01155 (RHM56_01155) - 238314..240380 (+) 2067 WP_322237758.1 carbon starvation CstA family protein -
  RHM56_RS01160 (RHM56_01160) - 240396..240593 (+) 198 WP_007937254.1 YbdD/YjiX family protein -
  RHM56_RS01165 (RHM56_01165) yjiA 240711..241679 (+) 969 WP_322237760.1 GTPase -
  RHM56_RS01170 (RHM56_01170) - 241808..242098 (-) 291 WP_322237763.1 addiction module antidote protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48782.34 Da        Isoelectric Point: 6.8988

>NTDB_id=876662 RHM56_RS01150 WP_322237755.1 236730..238097(+) (radA) [Pseudomonas sp. CCC3.1]
MAKPKRIFGCTECGATFPKWAGQCAECGVWNTLVETIVESGSAAPPSGRTGWTGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCQMATRMPALYVTGEESQQQVAMRARRLGLPQDQLKVMTETCIENIIA
TAKLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKSSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLNVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=876662 RHM56_RS01150 WP_322237755.1 236730..238097(+) (radA) [Pseudomonas sp. CCC3.1]
ATGGCCAAGCCTAAGCGCATATTCGGCTGCACAGAGTGCGGTGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGCAGAATG
CGGCGTCTGGAACACCTTGGTCGAAACCATTGTTGAAAGTGGTTCCGCCGCGCCACCCAGTGGCCGCACCGGCTGGACCG
GGCAACAGGCCCAGATCAAAACCCTGGCCGAAGTCAGCATCGAAGAAATTCCGCGCTTCTCCACCGCCTCCGGCGAACTG
GATCGGGTACTCGGCGGCGGTCTGGTCGACGGCTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAATCCACCAT
CTTGCTGCAAACCTTGTGTCAGATGGCCACGCGCATGCCCGCGCTGTACGTCACCGGCGAAGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGGCGTTTGGGCTTGCCGCAAGACCAACTCAAGGTCATGACCGAGACCTGCATCGAAAACATCATCGCC
ACCGCCAAGCTCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTCTCGCAAGTCCGCGAAAGCGCGGCATTGCTGGTGCGCTATGCCAAGTCGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAAGAGGGCGCACTCGCCGGTCCGCGTGTACTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAGTCCGACGGACGTTTGCGCTTGTTGCGCGCGGTCAAAAACCGGTTTGGCGCAGTCAACGAACTGGGTGTGTTCGG
CATGACCGACAAAGGCTTGAAAGAAGTCTCCAACCCGTCTGCGATCTTCCTGACCCGAGCACAAGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACGTGGGAAGGCACACGGCCCATGCTGGTTGAAGTGCAAGCGCTGGTGGACGACAGCCACATGTCC
AACCCGCGCCGCGTGACCTTGGGTCTGGACCAAAACCGACTGGCCATGTTGCTGGCGGTCTTGCATCGCCATGGTGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAAGTGCTGGAAACCGCCTCCGACCTGGCCTTGA
TGGCTGCTGTCATGTCCAGCTTGCGCAACCGGCCTTTGCCACACGACCTGCTGGTGTTTGGTGAGGTTGGCCTGTCGGGC
GAAGTTCGCCCGGTGCCGAGCGGTCAGGAACGTTTGAAAGAAGCGGCCAAACACGGTTTTAAACGCGCCATCGTGCCAAA
AGGCAACGCGCCGAAAGAGTCACCGCCGGGCCTGAATGTGATCGGCGTGACCCGTTTAGAGCAGGCATTGGATGCGTTGT
TTGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(81-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.495
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473