Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM62_RS14410 Genome accession   NZ_CP133777
Coordinates   3143059..3144441 (-) Length   460 a.a.
NCBI ID   WP_322122769.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3138059..3149441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS14390 (RHM62_14390) wecB 3138098..3139273 (+) 1176 WP_322122765.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  RHM62_RS14395 (RHM62_14395) - 3139263..3140084 (+) 822 WP_322122766.1 YaiO family outer membrane beta-barrel protein -
  RHM62_RS14400 (RHM62_14400) - 3140090..3140929 (+) 840 WP_322122767.1 hypothetical protein -
  RHM62_RS14405 (RHM62_14405) - 3141133..3142977 (+) 1845 WP_322122768.1 polysaccharide deacetylase family protein -
  RHM62_RS14410 (RHM62_14410) radA 3143059..3144441 (-) 1383 WP_322122769.1 DNA repair protein RadA Machinery gene
  RHM62_RS14415 (RHM62_14415) alr 3144462..3145547 (-) 1086 WP_322122770.1 alanine racemase -
  RHM62_RS14420 (RHM62_14420) lplT 3145727..3146989 (+) 1263 WP_322122771.1 lysophospholipid transporter LplT -
  RHM62_RS14425 (RHM62_14425) - 3146994..3147965 (-) 972 WP_322122772.1 DUF1853 family protein -
  RHM62_RS14430 (RHM62_14430) - 3147937..3148812 (-) 876 WP_322122773.1 uracil-DNA glycosylase -
  RHM62_RS14435 (RHM62_14435) rimI 3148809..3149300 (-) 492 WP_322122774.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48684.17 Da        Isoelectric Point: 7.4040

>NTDB_id=876657 RHM62_RS14410 WP_322122769.1 3143059..3144441(-) (radA) [Actimicrobium sp. CCC2.4]
MAKAKTNFTCSECGGISNKWTGQCPSCGQWNALVETQIESAGINRLSQQAAPVSLAQTAPVLSLADIEAVEVPRFGTGIE
EFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALANLSRSKKVLYVSGEESGAQIALRAKRLAVDAKDLQLQAEIQLEKI
LYTLAEHKPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRTAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLY
FEGDTHSSFRLVRAVKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSH
APNARRLSVGLDQNRLAMLLAVLHRHAGVAAFDQDVFINAVGGVKITEPAADLAVMLAIQSSLRNKPLPRGLVVFGEVGL
AGEIRPAPRGQERLREAAKLGFSIAMIPKANAPKGKVEGLTIIAVERIDEALEKIRDAAL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=876657 RHM62_RS14410 WP_322122769.1 3143059..3144441(-) (radA) [Actimicrobium sp. CCC2.4]
ATGGCAAAAGCAAAAACCAATTTCACCTGCAGCGAATGCGGTGGCATCAGCAACAAGTGGACGGGCCAGTGTCCGTCCTG
CGGGCAATGGAATGCGCTCGTTGAAACCCAGATCGAAAGCGCCGGCATCAACCGCTTGTCGCAGCAGGCCGCGCCCGTGA
GCCTGGCGCAGACTGCCCCGGTGCTGTCGCTGGCCGATATCGAGGCTGTCGAGGTGCCACGCTTTGGCACCGGTATCGAA
GAATTCGATCGTGTGCTTGGCGGCGGCCTGGTGCCGGGCGGTGTGGTGCTGATCGGAGGCGATCCGGGCATCGGCAAATC
GACGCTGTTATTGCAGGCGCTGGCCAATCTCTCGCGCAGCAAGAAGGTGCTGTATGTCAGTGGCGAGGAATCGGGTGCAC
AGATTGCGTTGCGCGCCAAGCGACTGGCGGTTGACGCCAAAGACCTGCAGTTGCAGGCCGAAATCCAGCTCGAAAAAATC
CTGTACACGCTGGCCGAACACAAGCCCGACGTCGCCGTGATCGATTCGATTCAAACGGTGTATTCGGATGCACTCAGTTC
GGCACCGGGGTCGGTGGCGCAGGTGCGTGAATGTGCGGCGCAACTCACGCGTACTGCCAAGCAGACCGGCGTGACCATCA
TCATGGTCGGGCATGTCACCAAGGAGGGTGCACTGGCAGGGCCGCGTGTACTGGAGCACATCGTGGATACGGTGCTGTAT
TTCGAGGGCGATACCCACTCCAGTTTCCGGCTGGTCCGCGCGGTTAAAAATCGTTTCGGCGCGGTCAATGAACTGGGCGT
GTTTGCGATGACCGAGAAGGGCTTGAAGGGTGTGTCCAACCCCTCGGCCCTGTTCTTGTCGCAGCACGATAACCAGGTTC
CGGGCTCTTGCGTGATGGTGACGCAAGAGGGAACGCGGCCCTTGCTGGTCGAGATACAGGCGCTGGTCGATACTTCGCAT
GCGCCGAATGCCCGGCGTCTGTCGGTGGGACTTGATCAAAACCGGCTGGCGATGTTACTCGCCGTGCTGCATCGACATGC
CGGCGTGGCAGCCTTCGATCAGGATGTCTTCATCAACGCCGTCGGTGGCGTCAAGATCACCGAACCGGCGGCTGACCTGG
CCGTGATGCTGGCGATCCAGTCCTCATTGCGCAACAAGCCCTTGCCACGCGGTCTGGTGGTATTTGGCGAGGTCGGTCTG
GCCGGTGAAATCCGTCCGGCGCCGCGCGGACAGGAGCGCTTGCGCGAAGCCGCCAAGCTGGGATTTTCAATCGCGATGAT
CCCGAAGGCGAATGCGCCGAAAGGCAAGGTCGAAGGCTTGACCATCATCGCCGTCGAGCGCATTGACGAGGCGCTGGAAA
AAATTCGCGATGCTGCCCTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.549

98.913

0.5
  radA Streptococcus mitis NCTC 12261

48.812

100

0.491
  radA Streptococcus pneumoniae Rx1

48.812

100

0.491
  radA Streptococcus pneumoniae D39

48.812

100

0.491
  radA Streptococcus pneumoniae R6

48.812

100

0.491
  radA Streptococcus pneumoniae TIGR4

48.812

100

0.491
  radA Streptococcus mitis SK321

48.812

100

0.491