Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM62_RS10685 Genome accession   NZ_CP133777
Coordinates   2287143..2289569 (+) Length   808 a.a.
NCBI ID   WP_322122089.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282143..2294569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS10670 (RHM62_10670) - 2284370..2285635 (+) 1266 WP_322122086.1 lipoprotein-releasing ABC transporter permease subunit -
  RHM62_RS10675 (RHM62_10675) lolD 2285628..2286326 (+) 699 WP_322122087.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RHM62_RS10680 (RHM62_10680) - 2286339..2287136 (+) 798 WP_322122088.1 TatD family hydrolase -
  RHM62_RS10685 (RHM62_10685) comA 2287143..2289569 (+) 2427 WP_322122089.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM62_RS10690 (RHM62_10690) - 2289583..2290386 (+) 804 WP_322122090.1 alpha/beta hydrolase -
  RHM62_RS10695 (RHM62_10695) - 2290383..2291297 (+) 915 WP_322122091.1 lipid A deacylase LpxR family protein -
  RHM62_RS10700 (RHM62_10700) - 2291405..2293069 (+) 1665 WP_322122092.1 CTP synthase -
  RHM62_RS10705 (RHM62_10705) kdsA 2293066..2293920 (+) 855 WP_322122093.1 3-deoxy-8-phosphooctulonate synthase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 87168.48 Da        Isoelectric Point: 10.2936

>NTDB_id=876653 RHM62_RS10685 WP_322122089.1 2287143..2289569(+) (comA) [Actimicrobium sp. CCC2.4]
MRAALLGFSAGVGVLQLQAALLPMTWAAALLVAAVALLVAFKSIPRRAIRLPLVASIAAVLGFAWATLFAQYYLQQSLPA
ALEGRDITVVGTIDSLPASAEQGVRFNFAVERVLPLDGITPVLPRRLALAWSSGFFGQITQTVGDVQPGERWQLTVRLAR
PHGNANPFGFDYEAWLLEQNLRATGYVRPDTGAALKNVRLASFVLSPGNLVERSRAWLRARILAALPDKPYAGVLVALVV
GDQRGVAQTDWNIFTRTGIGHLISISGLHITMVAGLFALLGKALWRRSFFTDAALPLRLPAQQFGVLVGVAVALLYVLLA
GFGVPAQRTLYMLSVVALALWCGRLTRVSSVLCIALAVVLLLDPWAVLAPGFWLSFGAVAVILYASVGRMPAAPLPPSSS
RWRRWRATLAPASRTQYVVSIGLVPLTLLLFGQVSLISPLANAVAIPLVSFVVTPLALLGSVAPAPLNGWLLLAGHAGIA
WLAQALAWLSGLSWAVWSAPIPSWWAFAAAAIGTLWWLAPRGWPVRWAGLAGWLPLLATMPTHPAVGQFDVIAFDVGQGM
ALLVETAGHRLLYDTGPAYSPDSDGANRVLLPYLKARGINALDAVVISHSDSDHSGGALSLLAAMPVGWLSSSLPPDHRI
VRAAAEHRRCFAGQQWDWDGVHFEMLHPTTVSYTSDKWKPNARSCTLKISAGGLSNLLPGDIEATSEIELVNSIPARLRS
TVLLAPHHGSGTSSTEGFLEAVAPSLALFQVGYRNRYRHPKPEVYERYAEHGITRLRTDSAGAITLQFARDLTFSTVRRD
HPRYWYDR

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=876653 RHM62_RS10685 WP_322122089.1 2287143..2289569(+) (comA) [Actimicrobium sp. CCC2.4]
ATGCGCGCGGCCTTGCTCGGGTTTTCAGCGGGAGTCGGCGTGCTGCAATTGCAAGCGGCGCTGCTGCCGATGACGTGGGC
GGCGGCATTGCTGGTGGCTGCGGTGGCGCTGCTCGTGGCGTTCAAGTCGATACCGCGCAGAGCAATACGACTTCCGCTGG
TCGCCAGCATCGCCGCCGTACTCGGCTTTGCCTGGGCCACGCTATTTGCACAGTACTACTTGCAGCAGTCGCTGCCCGCC
GCCCTCGAAGGTCGCGACATCACGGTCGTCGGCACGATCGACAGCTTACCGGCTAGTGCCGAACAGGGCGTGCGTTTCAA
CTTCGCCGTCGAGCGCGTGCTGCCGCTTGACGGCATCACGCCGGTCCTGCCGCGCCGGTTGGCGCTGGCATGGTCATCCG
GATTTTTCGGCCAGATCACGCAAACGGTCGGCGACGTGCAACCCGGCGAGCGCTGGCAATTGACGGTGCGCCTGGCGCGT
CCGCATGGCAATGCCAACCCGTTCGGATTCGATTATGAAGCCTGGCTGCTCGAACAAAATCTGCGCGCCACCGGCTATGT
CCGGCCCGATACCGGCGCCGCATTGAAGAACGTCCGGCTCGCGTCGTTTGTGCTCAGCCCCGGCAATCTGGTCGAACGCA
GCCGCGCCTGGCTGCGCGCGCGCATCCTTGCCGCCTTGCCTGACAAACCCTACGCCGGCGTGCTGGTCGCGCTGGTGGTC
GGTGACCAGCGTGGTGTCGCGCAAACCGATTGGAATATCTTTACGCGCACCGGTATCGGCCATCTGATATCGATTTCAGG
CTTGCACATCACGATGGTGGCCGGCTTGTTTGCGCTGCTCGGCAAGGCCTTGTGGCGACGTTCGTTTTTCACTGATGCGG
CCTTGCCGTTGCGGCTACCGGCGCAGCAATTCGGCGTACTGGTCGGTGTGGCGGTGGCGCTGCTGTACGTTTTACTGGCA
GGTTTTGGCGTGCCGGCGCAACGCACCCTGTACATGCTGTCGGTGGTCGCATTGGCACTCTGGTGCGGGCGGCTCACGCG
CGTCTCGTCGGTGCTGTGCATTGCGCTGGCGGTCGTGCTGCTGCTCGATCCGTGGGCCGTGCTGGCACCCGGATTCTGGC
TGTCGTTCGGCGCGGTGGCAGTGATCCTGTACGCCTCGGTCGGCCGCATGCCGGCTGCGCCGCTGCCGCCGTCAAGCTCG
CGCTGGCGGCGCTGGCGTGCCACGCTGGCACCGGCAAGCCGTACGCAATATGTCGTCTCGATCGGACTGGTGCCGCTGAC
CCTGCTGCTGTTCGGACAGGTCTCGCTGATCAGTCCGCTGGCCAATGCGGTGGCGATTCCACTGGTCAGTTTTGTGGTCA
CGCCGCTGGCCTTGCTCGGCAGTGTCGCGCCCGCGCCGCTCAATGGCTGGTTGCTGCTGGCGGGGCATGCCGGCATAGCC
TGGCTCGCGCAAGCATTGGCGTGGTTGAGCGGTTTGTCATGGGCGGTCTGGTCCGCACCGATACCATCCTGGTGGGCCTT
CGCCGCCGCGGCCATCGGCACCTTGTGGTGGCTGGCACCGCGCGGCTGGCCGGTGCGCTGGGCCGGGCTGGCCGGCTGGT
TGCCCTTGCTGGCGACGATGCCGACCCATCCGGCGGTGGGGCAATTCGATGTCATCGCCTTTGATGTCGGGCAGGGCATG
GCCTTGCTGGTCGAAACCGCCGGCCACCGTTTGCTGTACGACACGGGGCCGGCCTATTCGCCCGATTCCGATGGTGCCAA
CCGCGTGCTGCTGCCCTACCTGAAAGCACGGGGCATCAACGCGCTTGATGCGGTCGTCATTTCGCACAGCGATAGCGATC
ACTCCGGCGGGGCGCTGTCCTTGCTGGCGGCGATGCCGGTCGGCTGGTTGTCGAGCTCGCTGCCGCCGGACCACCGCATC
GTGCGCGCCGCGGCCGAACACCGGCGCTGCTTCGCCGGTCAGCAGTGGGATTGGGATGGCGTGCATTTCGAGATGCTGCA
TCCGACCACGGTCAGCTACACCAGCGACAAATGGAAACCCAATGCGCGCAGCTGCACCCTGAAAATTTCCGCCGGTGGCC
TGTCCAACCTGCTGCCTGGTGATATCGAAGCCACCTCCGAAATCGAACTGGTCAACAGCATTCCCGCCCGATTGCGCAGC
ACCGTGCTGCTGGCACCGCATCACGGCAGCGGCACGTCGTCCACCGAGGGTTTTCTTGAGGCGGTCGCGCCATCGCTGGC
GCTGTTCCAGGTCGGCTACCGTAACCGTTACCGTCATCCGAAGCCGGAGGTCTATGAGCGCTACGCCGAACATGGCATCA
CGCGTCTGCGAACAGATAGTGCCGGAGCAATCACATTACAATTCGCCCGAGATTTGACTTTCAGCACAGTGCGCCGCGAC
CATCCGCGATATTGGTATGACCGATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(238-522)

Metallo-beta-lactamase superfamily (Lactamase_B)

(556-709)

Domain of unknown function (DUF4131) (DUF4131)

(25-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.145

100

0.481