Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RHM62_RS04940 Genome accession   NZ_CP133777
Coordinates   1051284..1051715 (+) Length   143 a.a.
NCBI ID   WP_322124445.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1046284..1056715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS04915 (RHM62_04915) - 1046554..1048101 (-) 1548 WP_322124441.1 TerC family protein -
  RHM62_RS04920 (RHM62_04920) - 1048168..1048494 (-) 327 WP_322124442.1 hypothetical protein -
  RHM62_RS04925 (RHM62_04925) hemL 1048703..1049992 (-) 1290 WP_322124443.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RHM62_RS04930 (RHM62_04930) - 1050016..1050882 (-) 867 WP_322124444.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  RHM62_RS04935 (RHM62_04935) - 1050993..1051145 (+) 153 WP_322125322.1 rubredoxin -
  RHM62_RS04940 (RHM62_04940) pilG 1051284..1051715 (+) 432 WP_322124445.1 response regulator Regulator
  RHM62_RS04945 (RHM62_04945) - 1051715..1052080 (+) 366 WP_322124446.1 response regulator transcription factor -
  RHM62_RS04950 (RHM62_04950) - 1052091..1052666 (+) 576 WP_322124447.1 chemotaxis protein CheW -
  RHM62_RS04955 (RHM62_04955) - 1052719..1054950 (+) 2232 WP_416172288.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15558.96 Da        Isoelectric Point: 5.8681

>NTDB_id=876648 RHM62_RS04940 WP_322124445.1 1051284..1051715(+) (pilG) [Actimicrobium sp. CCC2.4]
MTTATEQSDPASLKVMVIDDSSTIRRSAEIFLGQAGYQVVLAEDGFDALAKMNDSRPALIFCDILMPRLDGYQTCALIKK
SARFHATPVIMLSSKDGLFDRARGALVGSDAYLTKPFTKDSLLKIVREFTATTQAVPVLPESP

Nucleotide


Download         Length: 432 bp        

>NTDB_id=876648 RHM62_RS04940 WP_322124445.1 1051284..1051715(+) (pilG) [Actimicrobium sp. CCC2.4]
ATGACCACAGCCACTGAACAGTCGGATCCCGCCAGCCTGAAAGTCATGGTCATCGACGACAGCAGCACGATCCGGCGTTC
CGCCGAAATTTTTCTGGGTCAGGCCGGTTACCAGGTAGTACTTGCCGAGGACGGTTTCGACGCGCTGGCGAAGATGAACG
ACAGCCGTCCTGCATTGATTTTTTGCGACATCCTGATGCCGCGACTCGATGGCTACCAAACCTGCGCACTGATCAAGAAA
AGTGCACGATTCCATGCCACACCGGTCATTATGCTGTCCTCCAAGGATGGCTTGTTCGACAGGGCTCGTGGCGCACTGGT
CGGTTCCGATGCGTACCTGACCAAACCATTTACCAAAGACAGTTTGCTTAAGATCGTGCGCGAATTCACTGCTACGACGC
AAGCTGTACCGGTTTTACCTGAAAGTCCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.157

84.615

0.517