Detailed information NTG0876642

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RHM62_RS03460
• Genome accession: NZ_CP133777
• Coordinates: 726755..727819 (-)
• Length: 354 a.a.
• NCBI ID: WP_322125306.1
• Uniprot ID: -
• Organism: Actimicrobium sp. CCC2.4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 721755..732819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHM62_RS03435 (RHM62_03435)	cyoE	722452..723339 (+)	888	WP_322124178.1	heme o synthase	-
RHM62_RS03440 (RHM62_03440)	-	723345..723968 (+)	624	WP_322124179.1	SCO family protein	-
RHM62_RS03445 (RHM62_03445)	rpoH	724015..724911 (-)	897	WP_322124180.1	RNA polymerase sigma factor RpoH	-
RHM62_RS03450 (RHM62_03450)	-	725133..726065 (-)	933	WP_322124181.1	ABC transporter permease	-
RHM62_RS03455 (RHM62_03455)	-	726062..726736 (-)	675	WP_322124182.1	cell division ATP-binding protein FtsE	-
RHM62_RS03460 (RHM62_03460)	pilA	726755..727819 (-)	1065	WP_322125306.1	signal recognition particle-docking protein FtsY	Machinery gene
RHM62_RS03465 (RHM62_03465)	rsmD	728022..728684 (+)	663	WP_322124183.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RHM62_RS03470 (RHM62_03470)	coaD	728722..729210 (+)	489	WP_322124184.1	pantetheine-phosphate adenylyltransferase	-
RHM62_RS03475 (RHM62_03475)	-	729220..729480 (+)	261	WP_322124185.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RHM62_RS03480 (RHM62_03480)	-	729490..730584 (-)	1095	WP_322124186.1	sensor domain-containing diguanylate cyclase	-
RHM62_RS03485 (RHM62_03485)	-	731037..731939 (+)	903	WP_322124187.1	HDOD domain-containing protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37754.89 Da
• Isoelectric Point: 7.1479

>NTDB_id=876642 RHM62_RS03460 WP_322125306.1 726755..727819(-) (pilA) [Actimicrobium sp. CCC2.4]
MFSFFKKKPKTEPAHAAVTVALSDAALPAAVPVTEVVAPPPPEETPAPPIEVKRSWLARLKSGLSKTSANLTTLFVGARI
DDDLYEELEAALLMADAGVDATHFLLSELKRRVKDEKLTEAAQVKSALRKLLIGLLSPLQKPLELGRHQPLVIMITGVNG
AGKTTTIGKLAKHLQANQQSVLLAAGDTFRAAAREQLTIWGERNNVAVIAQESGDPAAVAFDAVHSAMAKKTNVVMIDTA
GRLPTQLHLMEELKKIKRVIAKAMPSAPHEILLVIDGNTGQNALMQVKAFDDALGLTGLVVTKLDGTAKGGVLAAIARTR
PIPVYFIGVGEQIEDLQPFNADEFVTALLGEATD

Nucleotide

• Length: 1065 bp

>NTDB_id=876642 RHM62_RS03460 WP_322125306.1 726755..727819(-) (pilA) [Actimicrobium sp. CCC2.4]
ATGTTCAGCTTCTTCAAAAAAAAACCAAAGACCGAACCCGCGCACGCAGCCGTCACGGTAGCGTTATCAGATGCTGCACT
CCCGGCAGCGGTGCCCGTCACGGAAGTCGTCGCTCCGCCCCCGCCGGAAGAAACGCCGGCACCACCAATTGAGGTCAAAC
GATCCTGGCTGGCCCGCCTGAAATCAGGCTTGTCAAAAACATCGGCCAACCTGACCACACTGTTCGTCGGTGCGCGCATC
GACGACGATCTGTACGAAGAACTCGAAGCAGCCCTGCTGATGGCCGATGCAGGCGTCGACGCGACGCACTTCCTGTTGTC
CGAACTCAAGCGCCGCGTCAAGGACGAGAAACTGACCGAAGCTGCGCAAGTCAAATCGGCGCTGCGCAAGCTGTTGATCG
GCTTGCTCAGCCCGCTGCAAAAACCGCTGGAACTGGGCCGCCACCAGCCGCTGGTGATAATGATTACCGGCGTCAACGGC
GCCGGTAAAACCACCACCATCGGCAAACTTGCCAAGCACCTGCAAGCCAATCAACAGTCCGTGTTGCTGGCTGCCGGCGA
TACCTTCCGCGCGGCAGCACGCGAGCAATTGACGATCTGGGGCGAGCGCAATAATGTCGCGGTGATCGCGCAGGAATCCG
GCGATCCGGCAGCGGTAGCCTTCGATGCGGTGCATTCGGCCATGGCAAAGAAGACCAATGTGGTGATGATAGATACCGCC
GGCCGGTTGCCGACGCAGCTGCATCTGATGGAAGAGCTCAAGAAGATCAAGCGCGTGATCGCCAAGGCGATGCCAAGCGC
ACCGCATGAAATCCTGCTGGTCATCGATGGTAATACCGGCCAGAACGCGCTGATGCAAGTCAAGGCCTTCGATGACGCAC
TCGGCTTGACGGGACTGGTCGTCACCAAGCTCGATGGCACGGCCAAGGGCGGCGTACTGGCTGCCATTGCCCGGACCCGG
CCGATACCGGTTTATTTTATTGGAGTCGGCGAACAGATCGAAGATTTGCAACCGTTCAACGCCGACGAATTCGTCACCGC
CCTGCTGGGCGAAGCCACCGACTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-130)

• SRP54-type protein, GTPase domain (SRP54) (151-350)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.295	88.136	0.523