Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHM67_RS01950 Genome accession   NZ_CP133775
Coordinates   434502..435947 (-) Length   481 a.a.
NCBI ID   WP_322230120.1    Uniprot ID   -
Organism   Mucilaginibacter sp. 5C4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 429502..440947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM67_RS01930 (RHM67_01930) - 429617..430828 (-) 1212 WP_322230112.1 PQQ-dependent sugar dehydrogenase -
  RHM67_RS01935 (RHM67_01935) - 431083..432045 (+) 963 WP_322230114.1 lysylphosphatidylglycerol synthase domain-containing protein -
  RHM67_RS01940 (RHM67_01940) - 432042..433172 (+) 1131 WP_322230116.1 glycosyltransferase family 2 protein -
  RHM67_RS01945 (RHM67_01945) - 433261..434499 (+) 1239 WP_322230118.1 PP2C family protein-serine/threonine phosphatase -
  RHM67_RS01950 (RHM67_01950) radA 434502..435947 (-) 1446 WP_322230120.1 DNA repair protein RadA Machinery gene
  RHM67_RS01955 (RHM67_01955) - 436101..437651 (-) 1551 WP_322230122.1 Rne/Rng family ribonuclease -
  RHM67_RS01960 (RHM67_01960) - 437879..438730 (-) 852 WP_322230125.1 tetratricopeptide repeat protein -
  RHM67_RS01965 (RHM67_01965) - 438736..439038 (-) 303 WP_252758795.1 HU family DNA-binding protein -
  RHM67_RS01970 (RHM67_01970) mutY 439213..440256 (+) 1044 WP_322230128.1 A/G-specific adenine glycosylase -
  RHM67_RS01975 (RHM67_01975) - 440280..440702 (+) 423 WP_322230130.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 53132.13 Da        Isoelectric Point: 6.5902

>NTDB_id=876600 RHM67_RS01950 WP_322230120.1 434502..435947(-) (radA) [Mucilaginibacter sp. 5C4]
MAKSKIAYFCQSCGYESAKWLGKCPSCQQWNTFVEEILEKSNASVPNWKASPASSQRANKPVEVGEITFKEEHRLLTPDK
EFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALNMPNVKVLYVSGEESDHQIKMRAERLVSLDTQQERAKNKELKEEF
GKGCFILTETSTQNIFKQIEELQPDILVIDSIQTLHSSHVESTPGSVSQVRECTAELLRFAKETSTPVFLIGHITKDGMI
AGPKILEHMVDTVLQFEGDRHHVYRILRTIKNRFGSSSEIGIYEMLGEGLREVSNPSEILLSQRDEPLSGITISATLEGL
RPMLIETQALVSTSAYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLGAKDVFLNITGGIRVEDPAIDLGLAAAIISSHED
IPIPAKTCFAGEIGLSGEIRAVNRVEQRIAEAQKLGFEQIFISKYNMPTAAKDKKRLDLSRYTIDVKVVGRIEEVFGLLF
G

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=876600 RHM67_RS01950 WP_322230120.1 434502..435947(-) (radA) [Mucilaginibacter sp. 5C4]
TTGGCTAAATCTAAAATCGCTTATTTCTGTCAAAGCTGTGGTTACGAATCGGCCAAGTGGCTGGGTAAATGCCCAAGCTG
CCAGCAATGGAATACTTTTGTTGAAGAAATTTTAGAAAAATCGAACGCATCTGTACCCAACTGGAAGGCAAGCCCTGCAT
CATCGCAACGTGCCAACAAGCCGGTTGAGGTGGGCGAAATCACTTTTAAAGAAGAACATCGCCTGCTTACGCCCGATAAA
GAATTTAACCGGGTATTAGGTGGTGGCATTGTAGCCGGTTCATTAGTTTTAATAGGAGGCGAACCGGGTATTGGTAAATC
AACCCTGATGCTGCAGCTGGCGCTTAATATGCCTAATGTAAAAGTGCTATACGTATCCGGCGAGGAAAGCGACCACCAGA
TAAAGATGCGTGCGGAGCGTTTGGTGTCATTAGATACCCAACAGGAACGGGCAAAGAATAAAGAATTAAAAGAGGAATTT
GGAAAAGGATGTTTCATCCTGACCGAGACCTCAACCCAAAACATATTTAAGCAGATAGAGGAATTACAGCCGGATATCCT
GGTGATAGATTCTATCCAAACCTTGCACTCATCGCATGTGGAATCAACCCCGGGTAGTGTATCGCAAGTGAGGGAATGTA
CTGCCGAGCTTTTGCGTTTTGCTAAGGAGACATCTACCCCGGTATTTTTAATTGGTCACATTACCAAGGATGGCATGATA
GCCGGACCAAAAATATTGGAACACATGGTTGATACCGTACTGCAGTTTGAAGGCGACCGCCACCACGTTTACCGCATATT
GCGCACCATCAAAAACCGTTTCGGCTCATCATCAGAGATCGGCATATACGAGATGTTGGGCGAGGGCTTGCGCGAGGTGT
CTAATCCATCAGAGATCTTATTATCCCAACGGGACGAACCCTTAAGCGGCATCACCATATCGGCCACGTTAGAGGGCTTG
AGGCCAATGCTGATAGAAACCCAGGCGTTGGTGAGCACATCCGCTTACGGAACGCCCCAGCGAACCGCTACGGGCTTTGA
CACCAAACGAATGAGCATGCTGCTGGCCGTATTAGAAAAACGCTGTGGTTTCCGCCTTGGTGCTAAAGACGTATTCCTTA
ATATCACCGGTGGCATCCGTGTAGAGGACCCCGCTATTGATCTGGGCCTGGCAGCGGCAATTATCTCCTCGCACGAGGAT
ATCCCCATTCCGGCAAAAACCTGTTTCGCGGGTGAGATAGGTTTATCGGGCGAGATCCGTGCCGTTAACCGCGTGGAACA
GCGAATAGCCGAAGCGCAAAAGCTTGGCTTCGAGCAGATCTTTATCTCTAAATACAATATGCCAACCGCCGCGAAAGATA
AAAAACGGCTCGACCTGTCGCGTTATACCATCGATGTGAAAGTTGTGGGCAGGATAGAAGAGGTGTTTGGGTTGTTGTTC
GGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-239)

Subunit ChlI of Mg-chelatase (ChlI)

(357-446)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.641

95.01

0.491
  radA Streptococcus pneumoniae Rx1

50.893

93.139

0.474
  radA Streptococcus pneumoniae D39

50.893

93.139

0.474
  radA Streptococcus pneumoniae R6

50.893

93.139

0.474
  radA Streptococcus pneumoniae TIGR4

50.893

93.139

0.474
  radA Streptococcus mitis SK321

50.893

93.139

0.474
  radA Streptococcus mitis NCTC 12261

50.893

93.139

0.474