Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RGC88_RS22105 Genome accession   NZ_CP133768
Coordinates   4905807..4906760 (-) Length   317 a.a.
NCBI ID   WP_330706542.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YT9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4900807..4911760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC88_RS22080 (RGC88_22065) - 4901276..4902187 (-) 912 WP_346834721.1 aldo/keto reductase -
  RGC88_RS22085 (RGC88_22070) - 4902345..4903088 (-) 744 WP_346834722.1 alpha/beta hydrolase-fold protein -
  RGC88_RS22090 (RGC88_22075) - 4903122..4904102 (-) 981 WP_013373132.1 siderophore ABC transporter substrate-binding protein -
  RGC88_RS22095 (RGC88_22080) - 4904115..4904873 (-) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  RGC88_RS22100 (RGC88_22085) - 4904867..4905817 (-) 951 WP_013373134.1 iron chelate uptake ABC transporter family permease subunit -
  RGC88_RS22105 (RGC88_22090) ceuB 4905807..4906760 (-) 954 WP_330706542.1 ABC transporter permease Machinery gene
  RGC88_RS22110 (RGC88_22095) - 4907022..4907699 (+) 678 WP_064963588.1 response regulator transcription factor -
  RGC88_RS22115 (RGC88_22100) - 4907700..4908620 (+) 921 WP_064963589.1 HAMP domain-containing sensor histidine kinase -
  RGC88_RS22120 (RGC88_22105) - 4908728..4909405 (+) 678 WP_058711512.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34762.75 Da        Isoelectric Point: 9.9012

>NTDB_id=876575 RGC88_RS22105 WP_330706542.1 4905807..4906760(-) (ceuB) [Paenibacillus polymyxa strain YT9]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGTAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLVMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=876575 RGC88_RS22105 WP_330706542.1 4905807..4906760(-) (ceuB) [Paenibacillus polymyxa strain YT9]
ATGAAATTGCGCTATTTAATATTAGCTTTTCTGGTACTGGCCTTCGCCTCGGTGTTCATCGGTGTTCATGATGTGACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTTCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTGATTATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAACGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAGTCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAGAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCCGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511