Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RGC88_RS11900 Genome accession   NZ_CP133768
Coordinates   2678266..2680116 (+) Length   616 a.a.
NCBI ID   WP_330707043.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YT9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2673266..2685116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC88_RS11870 (RGC88_11865) rpsN 2673338..2673607 (+) 270 WP_346835732.1 30S ribosomal protein S14 -
  RGC88_RS11875 (RGC88_11870) - 2674051..2675061 (+) 1011 WP_064963331.1 GTP-binding protein -
  RGC88_RS11880 (RGC88_11875) - 2675078..2675500 (+) 423 WP_064963332.1 GTP cyclohydrolase, FolE2/MptA family -
  RGC88_RS11885 (RGC88_11880) - 2675505..2675792 (+) 288 WP_231124588.1 GTP cyclohydrolase, FolE2/MptA family -
  RGC88_RS11890 (RGC88_11885) - 2676023..2676430 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  RGC88_RS11895 (RGC88_11890) rcrP 2676510..2678279 (+) 1770 WP_165083992.1 ABC transporter ATP-binding protein Regulator
  RGC88_RS11900 (RGC88_11895) rcrQ 2678266..2680116 (+) 1851 WP_330707043.1 ABC transporter ATP-binding protein Regulator
  RGC88_RS11905 (RGC88_11900) - 2680902..2681870 (+) 969 WP_081275942.1 zinc-binding dehydrogenase -
  RGC88_RS11910 (RGC88_11905) trxA 2682032..2682349 (+) 318 WP_346835733.1 thioredoxin -
  RGC88_RS11915 (RGC88_11910) - 2682472..2683242 (+) 771 WP_346835734.1 SDR family oxidoreductase -
  RGC88_RS11920 (RGC88_11915) - 2683342..2684445 (+) 1104 WP_346835735.1 FAD-dependent oxidoreductase -
  RGC88_RS11925 (RGC88_11920) - 2684537..2684881 (+) 345 WP_346835736.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68159.94 Da        Isoelectric Point: 6.8231

>NTDB_id=876563 RGC88_RS11900 WP_330707043.1 2678266..2680116(+) (rcrQ) [Paenibacillus polymyxa strain YT9]
MDKNEHTVGSKHIKMKQQGPMGRGPTEGRGTGKKANDFRKNLRQLLSYIKAYAPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDINAIQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSQKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=876563 RGC88_RS11900 WP_330707043.1 2678266..2680116(+) (rcrQ) [Paenibacillus polymyxa strain YT9]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCATATCAAAATGAAACAGCAAGGTCCCATGGGTAGAGGTCCTACGGA
GGGGAGGGGGACTGGTAAAAAAGCGAATGATTTTAGAAAAAACTTACGCCAGCTCTTATCCTACATCAAGGCCTATGCGC
CTATGATTATCCTCTCTATGGTGCTGGCACTGGCCGGTTCCGTCTTCAATGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATTGTAACAGGGATTGATATAAATGCTATTCAGAAGATTGTTCTTGTACTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCAAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACTAACGATGTCGATACCATCGGACAAACATTAAACAACAGTCTCGGCACACTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACCCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAAATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTAGCGGTCTGTATCGTAGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTAGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAGCTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCAATCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TCATATTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGAGGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAC
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.153

93.669

0.526