Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RGC88_RS11895 Genome accession   NZ_CP133768
Coordinates   2676510..2678279 (+) Length   589 a.a.
NCBI ID   WP_165083992.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YT9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2671510..2683279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC88_RS11860 (RGC88_11855) - 2671885..2672688 (+) 804 WP_064963329.1 ATP-binding protein -
  RGC88_RS11865 (RGC88_11860) - 2673053..2673307 (+) 255 WP_013371187.1 deoxycytidine triphosphate deaminase -
  RGC88_RS11870 (RGC88_11865) rpsN 2673338..2673607 (+) 270 WP_346835732.1 30S ribosomal protein S14 -
  RGC88_RS11875 (RGC88_11870) - 2674051..2675061 (+) 1011 WP_064963331.1 GTP-binding protein -
  RGC88_RS11880 (RGC88_11875) - 2675078..2675500 (+) 423 WP_064963332.1 GTP cyclohydrolase, FolE2/MptA family -
  RGC88_RS11885 (RGC88_11880) - 2675505..2675792 (+) 288 WP_231124588.1 GTP cyclohydrolase, FolE2/MptA family -
  RGC88_RS11890 (RGC88_11885) - 2676023..2676430 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  RGC88_RS11895 (RGC88_11890) rcrP 2676510..2678279 (+) 1770 WP_165083992.1 ABC transporter ATP-binding protein Regulator
  RGC88_RS11900 (RGC88_11895) rcrQ 2678266..2680116 (+) 1851 WP_330707043.1 ABC transporter ATP-binding protein Regulator
  RGC88_RS11905 (RGC88_11900) - 2680902..2681870 (+) 969 WP_081275942.1 zinc-binding dehydrogenase -
  RGC88_RS11910 (RGC88_11905) trxA 2682032..2682349 (+) 318 WP_346835733.1 thioredoxin -
  RGC88_RS11915 (RGC88_11910) - 2682472..2683242 (+) 771 WP_346835734.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65127.42 Da        Isoelectric Point: 6.7636

>NTDB_id=876562 RGC88_RS11895 WP_165083992.1 2676510..2678279(+) (rcrP) [Paenibacillus polymyxa strain YT9]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWIGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEVSEKLVKAAVEIAQGTEFVEKMDDQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRVLRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=876562 RGC88_RS11895 WP_165083992.1 2676510..2678279(+) (rcrP) [Paenibacillus polymyxa strain YT9]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAGATTACAACCAAGCTGCAAACCGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
TAGCTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGACAGGCCAATGCAGAATTGACAAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGTCCGGGGATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCACATACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCATATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCTCGCATCATCGACGGACATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTTCGTAATGTCAGCTTCAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAGGGCGAGACGGTTGCCTTTATTGGTG
CAACAGGCAGCGGCAAAACCAGTGTGATCAATCTGATTTCCCGTTTCTACGATGTGACTGAGGGTGAGGTACTTGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCTTCCAACGTTTCGTATGGCGATAACGGAAGAGCAGAAGTTTCGGAGAAACTCGTCAAAGCCGCTGTGG
AGATTGCTCAGGGTACGGAGTTTGTCGAAAAAATGGACGATCAATATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCGGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCAGAGATTTACATCTTCGATGATTCCTT
CTCGGCACTCGACTACAGAACAGACCGGGTCCTGCGCTCTGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TGGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATTGTTCTCGACCAGGGCGAGATTGTAGGGAACGGCACA
CATGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAAATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.833

100

0.528