Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RE409_RS25650 Genome accession   NZ_CP133763
Coordinates   5258404..5259354 (-) Length   316 a.a.
NCBI ID   WP_053348872.1    Uniprot ID   A0AAX0S172
Organism   Peribacillus sp. R9-11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5253404..5264354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS25625 (RE409_25630) - 5254485..5254790 (-) 306 WP_309558267.1 hypothetical protein -
  RE409_RS25630 (RE409_25635) - 5254804..5255088 (-) 285 WP_201187264.1 hypothetical protein -
  RE409_RS25635 (RE409_25640) - 5255544..5256491 (-) 948 WP_207196220.1 siderophore ABC transporter substrate-binding protein -
  RE409_RS25640 (RE409_25645) - 5256712..5257470 (-) 759 WP_201187265.1 ABC transporter ATP-binding protein -
  RE409_RS25645 (RE409_25650) - 5257464..5258411 (-) 948 WP_053348652.1 iron chelate uptake ABC transporter family permease subunit -
  RE409_RS25650 (RE409_25655) ceuB 5258404..5259354 (-) 951 WP_053348872.1 ABC transporter permease Machinery gene
  RE409_RS25655 (RE409_25660) - 5259563..5260009 (+) 447 WP_207198793.1 DUF1450 domain-containing protein -
  RE409_RS25660 (RE409_25665) - 5260462..5262117 (+) 1656 WP_309558268.1 M14 family metallopeptidase -
  RE409_RS25665 (RE409_25670) shc 5262300..5264198 (+) 1899 WP_309558269.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34918.20 Da        Isoelectric Point: 9.5025

>NTDB_id=876536 RE409_RS25650 WP_053348872.1 5258404..5259354(-) (ceuB) [Peribacillus sp. R9-11]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVIAGVVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYISIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFVVNFGLVIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRIIIYPFEIPIGLVVGVIGSAVFIYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=876536 RE409_RS25650 WP_053348872.1 5258404..5259354(-) (ceuB) [Peribacillus sp. R9-11]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACCTCATTATTCATTGGAGTAAAAGATATTACGCC
ACTCGATTTATTAGATTTAAGTGATGATAAAGTGCAAATTATGCTGCAAAGCCGTTTTCCTAGAATGGTAACTATTGTAA
TTGCTGGGGTGGTTATGAGCATCAGTGGCTTAATCATGCAGCAATTGAGTAGAAATAAATTTGTATCACCAACAACTGCC
GGTACGATGGATTCTGCAAGGTTGGGTCTTCTTCTTGCTATTATCATTTTTCCATCCGCAGCACTTATTGAGAAAATGGC
ATTCGCATTCATATTCGCTTTGGCAGGCACTTTCTTGTTCATGAAAATTCTTGATCAAGTTAAATACAAGGATACGATTT
TCATTCCATTGGTTGGTTTGATGTTCGGTAATATCGTCGGATCTATTTCAACTTTCTTTGCTTATAAATATGATTTGATT
CAAAGTCTCAACACATGGATGAATGGTGATTTCTCGATGATTATGTCGGGAAGATATGAACTAATATACATAAGTATCCC
TTTGGTCATTCTCGCATACTTCTTTGCTAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTTGGAC
TCAATTATAAATTTGTAGTCAATTTTGGATTGGTAATCGTAGCATTATCCTCTACCGTCGTCTTGTTAACGGTGGGAACA
ATTCCTTTTATAGGACTGATTGTACCTAATATTGTTTCACTTTACCTTGGTGATAATTTGAAGAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCTGTGTTCCTATTGATCTGCGATATTCTGGGTCGGATTATCATTTATCCATTTGAAATTCCGATAG
GTCTCGTAGTTGGTGTAATAGGAAGCGCCGTATTTATCTATCTGATAATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.684

100

0.497