Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RE409_RS18600 Genome accession   NZ_CP133763
Coordinates   3838580..3840295 (-) Length   571 a.a.
NCBI ID   WP_201250680.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3833580..3845295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS18585 (RE409_18590) - 3833996..3835573 (-) 1578 WP_309557883.1 FapA family protein -
  RE409_RS18590 (RE409_18595) spo0A 3835983..3836774 (-) 792 WP_056525307.1 sporulation transcription factor Spo0A -
  RE409_RS18595 (RE409_18600) spoIVB 3837125..3838417 (-) 1293 WP_056525311.1 SpoIVB peptidase -
  RE409_RS18600 (RE409_18605) recN 3838580..3840295 (-) 1716 WP_201250680.1 DNA repair protein RecN Machinery gene
  RE409_RS18605 (RE409_18610) ahrC 3840318..3840767 (-) 450 WP_053346905.1 transcriptional regulator AhrC/ArgR -
  RE409_RS18610 (RE409_18615) - 3841129..3841956 (-) 828 WP_053346906.1 TlyA family RNA methyltransferase -
  RE409_RS18615 (RE409_18620) dxs 3841961..3843853 (-) 1893 WP_053346907.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RE409_RS18620 (RE409_18625) - 3844105..3844998 (-) 894 WP_201185758.1 polyprenyl synthetase family protein -
  RE409_RS18625 (RE409_18630) - 3845000..3845233 (-) 234 WP_053346909.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64337.28 Da        Isoelectric Point: 5.1478

>NTDB_id=876519 RE409_RS18600 WP_201250680.1 3838580..3840295(-) (recN) [Peribacillus sp. R9-11]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIDDDKHPVFAK
AEEFGLDMNDGMAILRRDISLSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKVASAL
AEYQKLFKRYETASKQLNSLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSIIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAGIEEEVEKLQNRETHIAKLEKEIKSIKADLIVEAKNLSELRQTFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIESEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=876519 RE409_RS18600 WP_201250680.1 3838580..3840295(-) (recN) [Peribacillus sp. R9-11]
TTGTTAACAGAACTTTCGATTAGGAATTTTGCGATCATTGACAGCTTGTCTGTTTCATTTGAAAAAGGCCTGACTGTATT
GACCGGCGAAACAGGGGCAGGGAAATCCATTATCATAGATGCCGTTCATTTATTGGTTGGTGGCCGTGGTTCGGCAGAGT
TCATTCGACATGGTGAGTCGAAGGCCGAAATAGAAGGGCTCTTTCAAATTGATGATGACAAACATCCGGTCTTTGCCAAG
GCTGAAGAATTTGGCTTGGATATGAATGATGGGATGGCTATCCTCCGAAGAGATATCTCACTCAGCGGCAAGAGCGTCTG
CCGGGTAAATGGAAAGCTCGTAACGATTGCAATTTTACGTGAGATAGGACGGACTTTGATAGATATACATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCACCTTCCTTTGCTTGACCAGTTCGGCGGCGAAAAAGTTGCTTCAGCTCTT
GCCGAATATCAAAAGTTATTTAAACGGTATGAGACAGCTTCTAAACAACTGAATAGTTTAAGTCAAAATGAACAGCAAAT
GGTTCATCGTCTCGATTTAATCCAGTTTCAATTCGATGAAATTCAGAAAGCGGATTTGAAACTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAAAAAATTAATAATTTCGAAAAAATTCATGAAGCGTTGCAAACCAGCTATAATGCTTTAAATGGA
GAACAACATGCAATTGATTGGCTATCCGTGGCCATGAATAACCTAGAAGAAGCAGCGGGTCTCGATGAGGGTTTAAAAAA
TAGCTCGGAAACTGTTTCAAATAGCTACTTCCTTCTCGAAGAAGCGGTCTCGATCATCCGAGATCAGTTAGATTCTTTGG
ATTATGATACAGAACGAGTCGAATTTATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAACGTAAATACGGACGGACC
ATCGAGGAAATATTGGAGTATGGTGCTGGGATTGAAGAAGAAGTCGAAAAGCTTCAAAATCGGGAAACCCATATAGCGAA
GCTTGAAAAAGAAATAAAATCTATTAAAGCTGATTTAATTGTTGAAGCAAAAAACCTGTCTGAACTTCGGCAAACATTCG
CACAGCAGTTAACAAAGAAAATACATCAGGAATTAAAAGATTTATACATGGAAAAAACAATTTTCGAACCGCATTTTCTT
CAAACAGCTTATACTTTCGATGAGTTATCAGACAGGGGAATTAATCAGTCGGGTCTGGATTCCATGGAGTTTTATATATC
CACCAATCCAGGAGAGCCGTTAAAACCTCTTTCGAAAATTGCTTCTGGCGGAGAGTTATCTAGGATTATGTTGGCTTTGA
AAAGTATTTTCTCCAAACATCAAGGCATTACTTCCATTATATTCGATGAGGTGGACACAGGTGTAAGCGGCAGGGTTGCA
CAATCTATTGCCGAAAAAATCTATAAAGTGGCAACGGGTTCCCAGGTACTTTGTATTTCACATTTACCACAGGTTGCGGC
AATGGCAGATACCCATTTATTTATTGCAAAAAATGTTAGAGCAGGACGAACCAATACTTCGGTGAAGCCTCTTATAGAAA
GTGAAAAAATAAAAGAAATTGGCAGGATGATCTCCGGTGTCGAGATTACGGATTTAACGAAGCAACATGCCAATGAATTA
ATTCAGCTAGCCAAAAGGTTGAAAATTACGTCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615