Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RE409_RS06915 Genome accession   NZ_CP133763
Coordinates   1438052..1439869 (+) Length   605 a.a.
NCBI ID   WP_309558764.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433052..1444869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS06895 (RE409_06900) spxA 1433380..1433775 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  RE409_RS06900 (RE409_06905) mecA 1434245..1434913 (+) 669 WP_053345000.1 adaptor protein MecA -
  RE409_RS06905 (RE409_06910) cls 1435037..1436548 (+) 1512 WP_201221663.1 cardiolipin synthase -
  RE409_RS06910 (RE409_06915) - 1436652..1437860 (+) 1209 WP_309558762.1 competence protein CoiA family protein -
  RE409_RS06915 (RE409_06920) pepF 1438052..1439869 (+) 1818 WP_309558764.1 oligoendopeptidase F Regulator
  RE409_RS06920 (RE409_06925) - 1440888..1441787 (-) 900 WP_082527662.1 ClpXP adapter SpxH family protein -
  RE409_RS06925 (RE409_06930) - 1441784..1442188 (-) 405 WP_053345004.1 globin -
  RE409_RS06930 (RE409_06935) - 1442423..1443082 (-) 660 WP_342214681.1 lytic transglycosylase domain-containing protein -
  RE409_RS06935 (RE409_06940) - 1443107..1443685 (-) 579 WP_201181814.1 CYTH domain-containing protein -
  RE409_RS06940 (RE409_06945) - 1444012..1444632 (+) 621 WP_309558766.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69890.40 Da        Isoelectric Point: 4.7981

>NTDB_id=876511 RE409_RS06915 WP_309558764.1 1438052..1439869(+) (pepF) [Peribacillus sp. R9-11]
MTQETKVNTLPSRSEIAAEDTWRLEDIFATEEDWEAAFKAVKEDLKKADAHKGTLGESAEKLFRALQFQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVARFLEEKEELNLYKHSLEEISLQRPHILSAE
QEALLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREDAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARHAALSNNNIPETVYDNLVKTVNDNLPLLHRYLELRKKVLELDELHMYDLFTPLVKEVKM
EVTYEEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSFYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVAIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLAK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=876511 RE409_RS06915 WP_309558764.1 1438052..1439869(+) (pepF) [Peribacillus sp. R9-11]
ATGACACAAGAAACAAAAGTAAATACATTGCCCTCAAGAAGTGAAATTGCAGCTGAAGATACTTGGAGGTTGGAAGATAT
CTTCGCGACTGAAGAAGACTGGGAAGCTGCCTTCAAAGCTGTAAAAGAAGACCTTAAGAAAGCGGATGCGCACAAAGGAA
CATTAGGTGAAAGCGCTGAAAAGTTATTTAGAGCCCTGCAATTCCAAGATGAAGTATTTGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGAATGGAAGACCGTGCAAAAGCTTTATA
CGCCCAGGCAGCAGCGGCATTTTCTTATATGGTTCCTGAACTATTGAGTATTGACGAAAGCAAAGTGGCTAGATTTTTAG
AAGAAAAAGAAGAATTGAATTTATATAAACATTCATTGGAGGAAATTAGTCTTCAGAGGCCTCATATCTTGTCTGCTGAG
CAGGAAGCTTTATTGGCACAAGCATCAGAAGTACTCGATGCATCAGGTAATACTTTCGGCATGCTTAACAATGCAGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGGAATGAAGTGGAAATAACTCACGGAAGGTACATTCGTTTCCTTGAAAGTG
AAGATCGTCGTGTACGTGAGGATGCATTTAAAGGGGTATATAGTAAGTATGGAGAGTTTCGCAATACATTTGCTTCAACC
CTGTCAGGTGAAGTGAAGAATCATAATTTCAATGCGACAGTTCGAAAATATGATTCGGCACGCCATGCGGCTTTAAGTAA
CAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAATGACAATTTGCCGTTACTGCACCGTTATCTTG
AATTACGTAAAAAAGTATTAGAATTAGATGAACTTCATATGTATGATTTATTCACTCCGCTTGTAAAAGAAGTGAAAATG
GAAGTGACATATGAGGAAGCGAAAGATTATGTCCTTAAAGGCCTTGCTCCACTTGGGGAAGACTATTTAAATGTTTTAAA
AGAAGGATTTGAAAATCGTTGGGTTGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCCTCTGGTACATACG
GGACGAATCCTTATATTTTAATGAACTGGCAGAATAACGTGAATAACTTATTCACTCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTTTTATACACGTAAATATCAGCCATACCCATACGGAAATTACTCTATTTTTGTAGCAGAAGTTGCATCGAC
ATGTAACGAAAATCTATTGAATGATTATTTATTAAATACAATCGAGGATGAAAAGAAACGCATCTATTTATTAAATCATT
ATTTAGAAGGCTTCCGTGGTACGCTGTTCCGTCAAACGATGTTTGCTGAGTTTGAACATACAATTCATTTGAAAGCTCAA
AATGGAGAGGCATTAACAGCAGATATGCTGACGAAGGAATATTATGAACTAAACAAGAAATACTTTGGAGAGAATGTAGC
CATTGATGAGGAAATCGGTCTGGAATGGGCTAGAATTCCACATTTCTACTATAATTACTACGTTTATCAATATGCGACTG
GTATAAGTGCAGCTACAGCCTTAAGCAAGCAAATTCTAGAAGAAGGAGAACCAGCTGTCAAAAGGTATTTGGAGTTCTTA
AAATCAGGAAGCTCCGATTATCCAATTGAGGTTCTCAAAAAGGCTGGCGTCGATATGACAAAAGCAGAGCCAGTGCAAGA
AGCCATGAATGTATTTGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGGCTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498