Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RE409_RS00570 Genome accession   NZ_CP133763
Coordinates   108825..110213 (+) Length   462 a.a.
NCBI ID   WP_309558365.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103825..115213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS00550 (RE409_00550) - 103924..104385 (+) 462 WP_053349092.1 CtsR family transcriptional regulator -
  RE409_RS00555 (RE409_00555) - 104406..104957 (+) 552 WP_098175000.1 UvrB/UvrC motif-containing protein -
  RE409_RS00560 (RE409_00560) - 104954..106030 (+) 1077 WP_053349090.1 protein arginine kinase -
  RE409_RS00565 (RE409_00565) clpC 106149..108590 (+) 2442 WP_056521792.1 ATP-dependent protease ATP-binding subunit ClpC -
  RE409_RS00570 (RE409_00570) radA 108825..110213 (+) 1389 WP_309558365.1 DNA repair protein RadA Machinery gene
  RE409_RS00575 (RE409_00575) disA 110216..111289 (+) 1074 WP_201188190.1 DNA integrity scanning diadenylate cyclase DisA -
  RE409_RS00580 (RE409_00580) - 111516..112613 (+) 1098 WP_056521799.1 PIN/TRAM domain-containing protein -
  RE409_RS00585 (RE409_00585) ispD 112635..113315 (+) 681 WP_201188191.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RE409_RS00590 (RE409_00590) ispF 113333..113812 (+) 480 WP_056521805.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50159.69 Da        Isoelectric Point: 7.7470

>NTDB_id=876503 RE409_RS00570 WP_309558365.1 108825..110213(+) (radA) [Peribacillus sp. R9-11]
MAAKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRGSGEREKAAPITTIQSDKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGVMSENLFVYAETDM
DYIQQAIQEVNPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISVASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALHHSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=876503 RE409_RS00570 WP_309558365.1 108825..110213(+) (radA) [Peribacillus sp. R9-11]
ATGGCTGCAAAAAAGAAAACGAAGTTTATGTGTCAGTCTTGTGGGTATGAATCAGCGAAGTGGATGGGAAAGTGCCCGGG
CTGTGGAGAATGGAATAAGATGGTCGAGGAAACCGAAATTGTTAAACCGGCTAGAAAAGGGGCTTTTACTCATTCAGAGG
TTAGAGGTTCCGGGGAACGTGAGAAGGCGGCACCTATAACTACTATTCAGTCAGACAAGGAACCTCGAATTAAGACAGAT
TTAATGGAATTGAATCGTGCGCTTGGTGGCGGGATTGTGCAGGGGTCACTTGTGTTAATTGGAGGAGATCCGGGTATTGG
TAAATCTACCCTACTTTTGCAAGTATCTTCACAGTTGGCGCATAAACAGAAAAAAGTGCTATATATTTCAGGTGAAGAAT
CAGTTAAACAGACCAAACTGAGAGCGGACCGGCTTGGGGTTATGTCAGAAAATCTATTCGTTTATGCGGAAACTGATATG
GATTATATCCAACAGGCAATTCAAGAGGTAAATCCGGATTTAGTTATTATTGATTCAATTCAAACAGTGTATCATTCTGA
AGTGACTTCCGCGCCGGGAAGTGTTTCACAAGTAAGGGAATGTACGGCATCGCTCATGCGTATTGCGAAGACGAATGGAA
TTGCGATCTTTATCGTCGGGCATGTTACGAAAGAAGGGGCGATTGCAGGGCCAAGGTTGCTTGAGCATATGGTAGACACT
GTTTTATATTTCGAAGGAGAAAGACACCATACATATCGAATTATACGCGCGGTCAAAAACCGCTTTGGTTCGACAAATGA
GATGGGTATTTTTGAAATGAAGGAACATGGTCTAGAAGAAGTCGCGAATCCCTCGGAAATTTTCCTTGAGGAACGGTCAC
AAGGAGCTTCGGGATCTACCGTTGTTGCGTCAATGGAAGGAACAAGACCGGTGCTTGTCGAAATTCAGGCATTAATTTCA
CCGACGAGTTTTGGAAATCCAAGGCGAATGGCTACTGGGATTGATCACAATAGGGTCTCGCTTTTAATGGCAGTCTTGGA
AAAGAGAGTGGGTTTGTTATTACAAAACCAAGATGCGTACCTAAAGGTTGCTGGAGGTGTCAAGCTGGATGAACCGGCAA
TTGATCTGGCTGTGGCAATTAGCGTTGCCTCAAGCTTCCGTGATAAACCAACAAATCCTGCCGATTGCATCATTGGAGAA
GTTGGGTTAACGGGGGAAGTAAGAAGGGTGTCCCGGATTGAACAACGAGTACAGGAAGCAGCAAAACTAGGGTTTGAACG
GGTCATTATACCAGCTAATAATATAGGTGGATGGACAGCTCCAAAGGGTATTAAGATTGTTGGGGTTTCATCGGTTTCGG
AGGCTCTTCATCATTCGTTAGGGGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(77-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.657

99.784

0.775
  radA Streptococcus mitis NCTC 12261

61.894

98.268

0.608
  radA Streptococcus pneumoniae Rx1

61.894

98.268

0.608
  radA Streptococcus pneumoniae D39

61.894

98.268

0.608
  radA Streptococcus pneumoniae R6

61.894

98.268

0.608
  radA Streptococcus pneumoniae TIGR4

61.894

98.268

0.608
  radA Streptococcus mitis SK321

61.674

98.268

0.606