Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RGQ10_RS18780 Genome accession   NZ_CP133760
Coordinates   3735504..3735902 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus velezensis strain F37     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3730504..3740902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGQ10_RS18755 (RGQ10_18755) - 3730676..3731878 (+) 1203 WP_014416870.1 GTP-binding protein -
  RGQ10_RS18760 (RGQ10_18760) - 3731943..3733079 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  RGQ10_RS18765 (RGQ10_18765) - 3733094..3733528 (+) 435 WP_014416871.1 RDD family protein -
  RGQ10_RS18770 (RGQ10_18770) - 3733645..3733923 (+) 279 WP_263612330.1 YckD family protein -
  RGQ10_RS18775 (RGQ10_18775) - 3734027..3735463 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  RGQ10_RS18780 (RGQ10_18780) nin/comJ 3735504..3735902 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  RGQ10_RS18785 (RGQ10_18785) nucA/comI 3735923..3736360 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RGQ10_RS18790 (RGQ10_18790) hxlB 3736691..3737248 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  RGQ10_RS18795 (RGQ10_18795) hxlA 3737245..3737880 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  RGQ10_RS18800 (RGQ10_18800) - 3738112..3738474 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=876477 RGQ10_RS18780 WP_014416873.1 3735504..3735902(-) (nin/comJ) [Bacillus velezensis strain F37]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=876477 RGQ10_RS18780 WP_014416873.1 3735504..3735902(-) (nin/comJ) [Bacillus velezensis strain F37]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765